View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6449_high_3 (Length: 460)
Name: NF6449_high_3
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6449_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 62 - 451
Target Start/End: Complemental strand, 13798296 - 13797886
Alignment:
| Q |
62 |
gttgttgaatgttgattggtttgagtggattttcccttttaggagtaagtggataccagattattacttattttttatacatatactttctgcaaga--- |
158 |
Q |
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| T |
13798296 |
gttgttgaatgttgattggtttgagtggattttcccttttaggagtaagtggataccagattattacttattttttatacgtatactttctgcaagaaat |
13798197 |
T |
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| Q |
159 |
-aaaatacttttctttttgttactataagacggcttataaacatggacagctacttgtg--------ttgttgggagtgcctggcttcttgaatatattt |
249 |
Q |
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| T |
13798196 |
taaaatacttttctttttgttactataagacggc-tataaacatggacagctacttgtgttgttgccttgttgggagtgcctggcttcttgaatatattt |
13798098 |
T |
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| Q |
250 |
tatctctcttataagatatgagaatgttatgtttataactttttagatgttcgaaatctaaaaataaaaata------------gatgttcaagacagaa |
337 |
Q |
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| T |
13798097 |
tatctctcttataagatatgagaatgttatgtttataactttttagatgttcgaaatctaaaaataaaaataaaaataaaaattgatgttcaagacagaa |
13797998 |
T |
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| Q |
338 |
tgtgtatacattatacatactatttcattttctatgtagtagttgtttatctttctcatagtcattgatttttaaatgttcaaataacattatatccctt |
437 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13797997 |
tgt-tat-gtttatacatactatttcattttctatgtagtagttgtttatctttctcatagtcattgatttttaaatgttcaaataacattatatccctt |
13797900 |
T |
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| Q |
438 |
cacctttgcttctc |
451 |
Q |
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| T |
13797899 |
caccttagcttctc |
13797886 |
T |
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