View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6449_high_5 (Length: 417)

Name: NF6449_high_5
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6449_high_5
NF6449_high_5
[»] chr1 (23 HSPs)
chr1 (21-401)||(38950177-38950548)
chr1 (71-255)||(43319222-43319409)
chr1 (16-160)||(18583665-18583812)
chr1 (28-160)||(23442641-23442776)
chr1 (16-160)||(33611531-33611678)
chr1 (22-160)||(24471436-24471566)
chr1 (22-160)||(27794752-27794892)
chr1 (16-112)||(32542297-32542395)
chr1 (58-160)||(42545901-42546005)
chr1 (29-112)||(30829625-30829710)
chr1 (45-143)||(34162860-34162961)
chr1 (53-143)||(41584809-41584901)
chr1 (35-129)||(49786179-49786275)
chr1 (22-127)||(17000277-17000382)
chr1 (58-206)||(32817687-32817837)
chr1 (58-143)||(7011142-7011229)
chr1 (58-160)||(40650796-40650902)
chr1 (93-160)||(44573217-44573285)
chr1 (93-129)||(45047003-45047039)
chr1 (106-160)||(28866752-28866806)
chr1 (202-239)||(43319027-43319064)
chr1 (58-120)||(38885172-38885236)
chr1 (29-69)||(49786907-49786947)
[»] chr3 (34 HSPs)
chr3 (16-401)||(48303882-48304276)
chr3 (26-158)||(51258304-51258438)
chr3 (29-143)||(49096366-49096481)
chr3 (22-249)||(45244286-45244512)
chr3 (17-134)||(47301912-47302030)
chr3 (16-143)||(2358762-2358892)
chr3 (22-160)||(3937285-3937426)
chr3 (22-113)||(43473119-43473211)
chr3 (38-134)||(42936582-42936680)
chr3 (45-129)||(50716172-50716258)
chr3 (45-129)||(50796589-50796675)
chr3 (29-130)||(33700661-33700765)
chr3 (58-156)||(34821521-34821622)
chr3 (47-129)||(3902959-3903043)
chr3 (40-134)||(33701462-33701560)
chr3 (96-245)||(44085457-44085608)
chr3 (24-112)||(52777140-52777230)
chr3 (58-160)||(35142010-35142112)
chr3 (53-88)||(8735099-8735134)
chr3 (192-251)||(8735251-8735310)
chr3 (53-88)||(9087340-9087375)
chr3 (192-251)||(9087492-9087551)
chr3 (104-158)||(39149791-39149845)
chr3 (53-160)||(501262-501372)
chr3 (53-160)||(51540735-51540847)
chr3 (16-69)||(8657750-8657803)
chr3 (58-160)||(47740053-47740158)
chr3 (16-69)||(2358094-2358147)
chr3 (16-69)||(3938812-3938865)
chr3 (65-159)||(38977870-38977967)
chr3 (202-255)||(45244674-45244727)
chr3 (93-160)||(33438492-33438560)
chr3 (65-143)||(47123046-47123126)
chr3 (65-143)||(47130412-47130492)
[»] chr5 (27 HSPs)
chr5 (22-401)||(36359459-36359848)
chr5 (18-251)||(26318973-26319202)
chr5 (175-345)||(34440747-34440926)
chr5 (45-160)||(25746909-25747025)
chr5 (16-160)||(26190419-26190566)
chr5 (47-160)||(6156615-6156731)
chr5 (58-143)||(31929245-31929331)
chr5 (29-160)||(37095036-37095168)
chr5 (22-209)||(38871531-38871718)
chr5 (47-160)||(15799109-15799225)
chr5 (38-251)||(38640595-38640812)
chr5 (29-129)||(33487477-33487578)
chr5 (45-134)||(4064868-4064959)
chr5 (53-160)||(27212598-27212708)
chr5 (58-251)||(43388100-43388297)
chr5 (53-127)||(15957640-15957715)
chr5 (22-206)||(20891472-20891658)
chr5 (58-160)||(28083499-28083604)
chr5 (58-134)||(28108277-28108354)
chr5 (90-160)||(12465227-12465299)
chr5 (192-251)||(8739223-8739282)
chr5 (45-128)||(24203834-24203919)
chr5 (93-245)||(34529957-34530114)
chr5 (93-143)||(40620129-40620179)
chr5 (202-251)||(16429109-16429158)
chr5 (93-134)||(38372241-38372282)
chr5 (38-86)||(34440619-34440667)
[»] chr4 (25 HSPs)
chr4 (202-401)||(50392311-50392513)
chr4 (255-339)||(46846237-46846321)
chr4 (22-160)||(6228932-6229073)
chr4 (40-160)||(50392530-50392654)
chr4 (16-157)||(49396907-49397051)
chr4 (16-160)||(32441710-32441857)
chr4 (16-160)||(23523805-23523952)
chr4 (22-143)||(25539087-25539209)
chr4 (16-134)||(6003821-6003941)
chr4 (45-143)||(55052758-55052858)
chr4 (58-160)||(19835461-19835566)
chr4 (29-112)||(34972786-34972871)
chr4 (46-160)||(38536099-38536216)
chr4 (29-129)||(3703403-3703505)
chr4 (96-160)||(40703645-40703710)
chr4 (65-160)||(17933258-17933356)
chr4 (47-143)||(29822550-29822647)
chr4 (93-160)||(25752565-25752633)
chr4 (58-160)||(54631584-54631689)
chr4 (93-160)||(48319186-48319253)
chr4 (93-158)||(7931636-7931702)
chr4 (38-110)||(42660430-42660504)
chr4 (58-160)||(25491516-25491621)
chr4 (16-69)||(27631848-27631901)
chr4 (58-160)||(53894112-53894217)
[»] chr8 (19 HSPs)
chr8 (29-255)||(41530573-41530803)
chr8 (16-158)||(21004281-21004426)
chr8 (47-160)||(3094603-3094719)
chr8 (29-251)||(7971027-7971252)
chr8 (47-229)||(36404208-36404391)
chr8 (64-160)||(31520013-31520112)
chr8 (58-160)||(8885574-8885679)
chr8 (345-401)||(42676509-42676565)
chr8 (53-160)||(16310527-16310637)
chr8 (45-160)||(44106143-44106261)
chr8 (93-160)||(27928062-27928130)
chr8 (45-129)||(37248478-37248564)
chr8 (202-251)||(24627649-24627698)
chr8 (177-241)||(9845250-9845314)
chr8 (64-160)||(28916722-28916821)
chr8 (202-248)||(24628066-24628112)
chr8 (58-160)||(34853263-34853367)
chr8 (16-69)||(31519367-31519420)
chr8 (58-129)||(42281047-42281120)
[»] chr7 (22 HSPs)
chr7 (16-160)||(3304879-3305026)
chr7 (23-160)||(6467594-6467735)
chr7 (16-160)||(47202385-47202532)
chr7 (53-160)||(24042309-24042419)
chr7 (61-160)||(43737060-43737162)
chr7 (40-143)||(28346063-28346167)
chr7 (47-160)||(42925762-42925878)
chr7 (53-127)||(36468691-36468766)
chr7 (58-160)||(3936041-3936146)
chr7 (53-156)||(28230593-28230698)
chr7 (38-160)||(31642954-31643079)
chr7 (58-160)||(19225719-19225825)
chr7 (35-160)||(33574155-33574288)
chr7 (90-207)||(8154865-8154983)
chr7 (93-143)||(36408341-36408391)
chr7 (45-129)||(28349237-28349323)
chr7 (93-160)||(37518416-37518484)
chr7 (93-128)||(36629175-36629210)
chr7 (193-251)||(5731220-5731278)
chr7 (21-62)||(8155530-8155571)
chr7 (58-128)||(42877199-42877271)
chr7 (21-69)||(47203112-47203160)
[»] chr6 (13 HSPs)
chr6 (22-160)||(33413468-33413608)
chr6 (16-122)||(5638770-5638878)
chr6 (39-160)||(32035027-32035151)
chr6 (22-160)||(5699456-5699596)
chr6 (23-160)||(4508423-4508562)
chr6 (22-160)||(2813345-2813487)
chr6 (93-158)||(1945652-1945718)
chr6 (93-160)||(17264380-17264448)
chr6 (46-155)||(23406717-23406829)
chr6 (65-160)||(7412768-7412866)
chr6 (22-160)||(3717404-3717544)
chr6 (30-143)||(24604501-24604617)
chr6 (93-160)||(14587681-14587749)
[»] chr2 (15 HSPs)
chr2 (16-160)||(36949061-36949208)
chr2 (22-251)||(9847450-9847682)
chr2 (22-251)||(25715260-25715489)
chr2 (72-160)||(17474915-17475006)
chr2 (40-160)||(34517016-34517139)
chr2 (53-160)||(25217906-25218016)
chr2 (66-160)||(44465844-44465941)
chr2 (64-129)||(39447101-39447168)
chr2 (58-160)||(33452559-33452664)
chr2 (53-128)||(15995263-15995340)
chr2 (190-251)||(34519567-34519628)
chr2 (93-160)||(41510544-41510612)
chr2 (24-143)||(5507315-5507436)
chr2 (58-160)||(45153907-45154012)
chr2 (21-69)||(36948605-36948653)
[»] scaffold0137 (1 HSPs)
scaffold0137 (47-160)||(9618-9734)
[»] scaffold0027 (1 HSPs)
scaffold0027 (58-160)||(142084-142188)
[»] scaffold0182 (1 HSPs)
scaffold0182 (90-160)||(23089-23160)
[»] scaffold0010 (1 HSPs)
scaffold0010 (58-127)||(140541-140612)
[»] scaffold0508 (1 HSPs)
scaffold0508 (22-160)||(3516-3658)
[»] scaffold0016 (1 HSPs)
scaffold0016 (209-251)||(205841-205883)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 401
Target Start/End: Original strand, 38950177 - 38950548
Alignment:
Q  21 gttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaagtgaaaaatgagttacggatttttccggatt 120  Q
    ||||||||||||| |||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  38950177 gttttttacaaaaatgtctttgaggtttccggattttataattcggaatggtattttcctttgttaaaagtgaaaaatgagttacggatttttccagatt 38950276  T
Q  121 ttgtaatccagaaatctcaaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactctttt-ttcatggtgttgat 219  Q
    ||||||||||         ||||||||| |||||||||||       || |||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  38950277 ttgtaatcca---------aaaatagggcgcgttacatgatttttt-cagattacataatccgaaaactccctaaacactctttttttcatggtgttgat 38950366  T
Q  220 gctatccggattacgtaatccagacagcaccatcacttgtgtaaacagagggtgtgatggctggaactaaggcagctgttgttgctactattgccactgc 319  Q
    || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||     
T  38950367 gcaattcggattacgtaatccagacagcagcatcacttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgttgctactgttgccactgt 38950466  T
Q  320 cattccaactgtaaccactcattccagttgcatttctttctagaagtattgagtccttaaaagttctgtaaaaattaaaatg 401  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38950467 cattccaactgtaaccactccttccaattgcatttctttctagaagtattgagtccttaaaagttctgcaaaaattaaaatg 38950548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 255
Target Start/End: Complemental strand, 43319409 - 43319222
Alignment:
Q  71 gtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctcaaaaa-tagggtgcgttacatgannnnnnn 167  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| || || |||||||||||           
T  43319409 gtgttttcctttgttaaagggtgaaaaaatgagttacggatttttccggattttgtaatccggaaatctaaaaaaatatggcgcgttacatgatttttt- 43319311  T
Q  168 caaattacataatccgaaaactctctaaacactctttttt-catggtgttgatgctatccggattacgtaatccagacagcaccatcac 255  Q
    |  |||||||||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  43319310 cggattacataatccgaaaaccccctaaacactctttttttcatggtgctgatgcaatccggattacgtaatccggacagcaccatcac 43319222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 18583812 - 18583665
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaatg-agttacggattttt 113  Q
    |||||||||||| ||||| || ||||||||||| || |||||||||| ||||||||||||||||||||||| |  |||||||||| ||||||||| ||||    
T  18583812 cctgtgtttttttcaaaaatgcccttgaggttttcggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggactttt 18583713  T
Q  114 ccggattttgtaatccagaaa-tctcaaaaatagggtgcgttacatga 160  Q
    |||||||||||||||  |||| |   |||||||||| |||||||||||    
T  18583712 ccggattttgtaatctggaaacttaaaaaaatagggcgcgttacatga 18583665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 23442641 - 23442776
Alignment:
Q  28 acaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgta 125  Q
    |||||| || |||||||||||||| ||||||| || ||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||| ||    
T  23442641 acaaaaatgcccttgaggtttccggatttcattatccggaatgatgttttcctttgttataaggtgaaaaatggagttacggatttttccggattttata 23442740  T
Q  126 atccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||  ||||  || |||||||||| |||||||||||    
T  23442741 atctggaaacttcaaaaaatagggcgcgttacatga 23442776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 33611678 - 33611531
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| || |||||||||||| | |||||||||| | |||||||||||| |||||||| |  ||||||||| |||||||||||||||    
T  33611678 cctgtgtttttttcaaaaatgcccttgaggtttctggatttcataatccagaatggtgtttttctttgttatagggtgaaaaatggagttacggattttt 33611579  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
     |||||||||||||   ||||  || |||||||||| |||||||||||    
T  33611578 tcggattttgtaatttggaaacttcaaaaaatagggcgcgttacatga 33611531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 24471566 - 24471436
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggat 119  Q
    |||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |  ||| ||||| ||||||          |||||    
T  24471566 ttttttccaaaaatgtccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgcaaaatggagtta----------cggat 24471477  T
Q  120 tttgtaatccagaaatctcaaaaatagggtgcgttacatga 160  Q
    |||||||||||||||  |||||||||||| |||||||||||    
T  24471476 tttgtaatccagaaacttcaaaaatagggcgcgttacatga 24471436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 27794752 - 27794892
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtg-aaaaatgagttacggatttttccggat 119  Q
    |||||| ||||| || ||||||  ||| || |||||||||| || | |||||||||||||||||| |  ||| |||||||||||| |||||||| | |||    
T  27794752 tttttttcaaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttgttatagggtgaaaaaatgagttatggattttttcagat 27794851  T
Q  120 tttgtaatccagaaatctcaaaaatagggtgcgttacatga 160  Q
    ||||||||||  ||||||||||||||||| || ||||||||    
T  27794852 tttgtaatccgaaaatctcaaaaatagggcgctttacatga 27794892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 32542297 - 32542395
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtt-aaaagtgaaaaat-gagttacggatttt 112  Q
    |||||||||||| ||||| || | |||||||||||| |||||||||| ||||||||||||||||||||||  |  ||||||||| ||||||||||||||    
T  32542297 cctgtgtttttttcaaaaatgccattgaggtttccggatttcataatccggaatggtgttttcctttgttgtagggtgaaaaatggagttacggatttt 32542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 42545901 - 42546005
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtta 155  Q
    ||||| |||||||||||| || ||||||||| | |||||||||| | |||||||||||||||||||||||||| ||||  || |||||||||  ||||||    
T  42545901 ataatccggaatggtgttatcttttgttaaagggtgaaaaatgaataacggatttttccggattttgtaatccggaaacttcaaaaaataggacgcgtta 42546000  T
Q  156 catga 160  Q
    |||||    
T  42546001 catga 42546005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 30829710 - 30829625
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaatg-agttacggatttt 112  Q
    ||||| || |||||| ||||||| |||||||||| ||||||||||||||||||||||| |  |||||||||| |||||||||||||    
T  30829710 caaaaatgcccttgaagtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggatttt 30829625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 34162961 - 34162860
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttac-ggatttttccggattttgtaatccagaaatctcaaa 141  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||| | || ||||||||||||||||||||| ||||  |||||    
T  34162961 gtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttgcgggttttttccggattttgtaatccggaaacttcaaa 34162862  T
Q  142 aa 143  Q
    ||    
T  34162861 aa 34162860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 41584901 - 41584809
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatga-gttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    ||||||||||  |||||||||||||| ||||||| | | |||||||||| ||||||| |||||| |||||||||||||| ||||| |||||||    
T  41584901 atttcataatcaggaatggtgttttcttttgttatagggtgaaaaatgaagttacgggtttttctggattttgtaatccggaaatttcaaaaa 41584809  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 49786179 - 49786275
Alignment:
Q  35 tgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatcc 129  Q
    |||| |||||||||||| ||||||||||  ||||| |||||||||||| ||| |  ||||||||| |||||| |||||||||||||||||| |||||    
T  49786179 tgtctttgaggtttccggatttcataatctggaattgtgttttcctttattatagggtgaaaaatggagttatggatttttccggattttgcaatcc 49786275  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 17000277 - 17000382
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggat 119  Q
    |||||| ||||| || ||||||| |||| | |||||||||| | ||||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||    
T  17000277 ttttttccaaaaatgcccttgagttttcgg-atttcataatccagaatggtgttttcctttgttatagggtgaaaaatggagttacgg-tttttccggat 17000374  T
Q  120 tttgtaat 127  Q
    ||||||||    
T  17000375 tttgtaat 17000382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 32817837 - 32817687
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||||| |||| ||||||| ||||||||||||| ||||  || |||||||||| || ||    
T  32817837 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccagattttgtaatccggaaacttcaaaaaatagggcgcatt 32817738  T
Q  155 acatgannnnnnncaaattacataatccgaaaactctctaaacactcttttt 206  Q
    ||||||       || |||||||||||||||||| | |||||||| ||||||    
T  32817737 acatga-tgtttccagattacataatccgaaaaccccctaaacacccttttt 32817687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 7011142 - 7011229
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacgga-tttttccggattttgtaatccagaaatctcaaaaa 143  Q
    ||||||||||| |||||||||  |||||||| | |||||||||||| ||||| |||||| |||||||||||||| ||||  |||||||    
T  7011142 ataattcggaaaggtgttttctattgttaaagggtgaaaaatgagtaacggattttttctggattttgtaatccggaaacttcaaaaa 7011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 40650902 - 40650796
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaa-agtg--aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgt 153  Q
    ||||| ||||||||||||||| |||||||||  |||  |||||||||| |||||||||| |||| |||||||||| ||||  || |||||||||| | ||    
T  40650902 ataatccggaatggtgttttcttttgttaaagcgtgaaaaaaatgagtaacggattttttcggaatttgtaatccggaaacttcaaaaaatagggcgtgt 40650803  T
Q  154 tacatga 160  Q
    |||||||    
T  40650802 tacatga 40650796  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 44573285 - 44573217
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| || ||||||| ||||||||||||||| ||||  || |||||||||| |||||||||||    
T  44573285 aaaaatgagtaacagattttttcggattttgtaatccggaaacttcaaaaaatagggcgcgttacatga 44573217  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 45047039 - 45047003
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatcc 129  Q
    |||||||||| ||||||||||||||||||||||||||    
T  45047039 aaaaatgagtaacggatttttccggattttgtaatcc 45047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 28866806 - 28866752
Alignment:
Q  106 ggatttttccggattttgtaatccagaaatctcaaaaatagggtgcgttacatga 160  Q
    |||||||||||||||||||||||| ||| | | |||||||||| ||| |||||||    
T  28866806 ggatttttccggattttgtaatccggaactataaaaaatagggcgcgctacatga 28866752  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 43319064 - 43319027
Alignment:
Q  202 ttttttcatggtgttgatgctatccggattacgtaatc 239  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  43319064 ttttttcatggtgctgatgcaatccggattacgtaatc 43319027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 38885172 - 38885236
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaa-agtg-aaaaatgagttacggatttttccggatt 120  Q
    ||||| ||||||||||||||| |||||||||  ||| |||||||||| || ||||||||||||||    
T  38885172 ataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacagatttttccggatt 38885236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 49786947 - 49786907
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    ||||| ||||||||||||||||| |||||||||| ||||||    
T  49786947 caaaaatgtccttgaggtttccggatttcataatccggaat 49786907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 401
Target Start/End: Original strand, 48303882 - 48304276
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggattttt 113  Q
    |||| ||||||  ||||| || |||||||||||||  |||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  48303882 cctgcgtttttctcaaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttacggattttt 48303981  T
Q  114 ccggattttgtaatccagaaatctcaaaaa-tagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactctttttt-catg 211  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||       || |||||||||||||||||| | || |||||  |||||| ||||    
T  48303982 ccggattttgtaatccggaaatctcaaaaaatagggtgtgttacatgatttttt-cagattacataatccgaaaaccccctcaacaccatttttttcatg 48304080  T
Q  212 gtgttgatgctatccggattacgtaatccagacagcaccatcac------ttgtgtaaacagagggtgtgatggctggaactaaggcagctgttgttgct 305  Q
    ||| |||||| |||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48304081 gtggtgatgcaatccggattacgtaatccagacagcaccatcaccaattcttgtgtaaacagagggtgtgatggctggagctaaggcagctgttgttgct 48304180  T
Q  306 actattgccactgccattccaactgtaaccactcattccagttgcatttctttctagaagtattgagtccttaaaagttctgtaaaaattaaaatg 401  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||    
T  48304181 actattgccactgccattccaactgtaaccactccttccagttgcatttacttctagaagtattgagtccttaaaaattctgcaaaaattaaaatg 48304276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 51258304 - 51258438
Alignment:
Q  26 ttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgt 124  Q
    |||||||| ||||||||| ||||| | |||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  51258304 ttacaaaaatgtccttgaagtttctggatttcataatccggaattgtgttttcctttgttaaagggtgaaaaatgagttacggatttttccggattttgt 51258403  T
Q  125 aatccagaaatctc-aaaaatagggtgcgttacat 158  Q
    |||||| |||| || |||||||||| |||||||||    
T  51258404 aatccataaatttcaaaaaatagggcgcgttacat 51258438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 49096481 - 49096366
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaat 127  Q
    ||||| ||||||||| ||||||| ||||||||||  |||||| |||||| |||| ||||| | |||||||| ||||||||||||||||||||||||||||    
T  49096481 caaaaatgtccttgaagtttccgaatttcataatctggaatgatgtttttctttattaaagggtgaaaaataagttacggatttttccggattttgtaat 49096382  T
Q  128 ccagaaatctcaaaaa 143  Q
    || |||||||||||||    
T  49096381 ccggaaatctcaaaaa 49096366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 45244286 - 45244512
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaa-atgagttacggatttttccggat 119  Q
    |||||| ||||| | ||||||| |||| || | || ||||| |||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  45244286 tttttttcaaaaatatccttgaagttttcggaattaataatccggaattgtgttttcctttgttaaaagatgaaaaaatgagttatggatttttccggat 45244385  T
Q  120 tttgtaatccagaaatctc-aaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactc-ttttttcatggtgttg 217  Q
    |||||||| |  ||||||| |||||||||| |||||||||||       |  ||||||||||| |||||    | |||||| | ||||||||||||| ||    
T  45244386 tttgtaattcgaaaatctcaaaaaatagggcgcgttacatga-ttttttcggattacataatctgaaaa----ccaaacaccctttttttcatggtgctg 45244480  T
Q  218 atgctatccggattacgtaatccagacagcac 249  Q
    |||| ||| |||||||||||||| ||||||||    
T  45244481 atgcaatctggattacgtaatccggacagcac 45244512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 47301912 - 47302030
Alignment:
Q  17 ctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttc 114  Q
    |||||||||||  ||||| |||||||| |||| || |||||||||||||||||||||||||||||||||| |  ||||||||| |||||| |||||||||    
T  47301912 ctgtgtttttttaaaaat-gtccttgaagttttcggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttatggatttttc 47302010  T
Q  115 cggattttgtaatccagaaa 134  Q
    ||||||||||||||| ||||    
T  47302011 cggattttgtaatccggaaa 47302030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 2358892 - 2358762
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttcc-gtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttt 112  Q
    |||||||||||| ||||| || ||||||||||||| | |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||||||||    
T  2358892 cctgtgtttttttcaaaaatgcccttgaggtttcccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttt 2358793  T
Q  113 tccggattttgtaatccagaaatctcaaaaa 143  Q
     | |||||||||||||| ||||  |||||||    
T  2358792 cctggattttgtaatccggaaacttcaaaaa 2358762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 3937285 - 3937426
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaat-gagttacggatttttccggat 119  Q
    |||||| ||||| || |||||||||||||| |||| ||||| | ||||||||||||||||||||| | | |||||||| ||||||||  |||||||| ||    
T  3937285 tttttttcaaaaatgcccttgaggtttccggattttataatccagaatggtgttttcctttgttataggatgaaaaatggagttacgagtttttccgaat 3937384  T
Q  120 tttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| ||||  || |||||||||| |||||||||||    
T  3937385 tttgtaatccggaaacttcaaaaaatagggcgcgttacatga 3937426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 43473211 - 43473119
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaagtgaaaaat-gagttacggattttt 113  Q
    |||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    ||||||||| |||||||||||||||    
T  43473211 tttttttcaaaaatgtccttgaggtttccgaatttcataatccggaatggtgttttcctttgttttgggtgaaaaatggagttacggattttt 43473119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 42936582 - 42936680
Alignment:
Q  38 ccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtg-aaaaatgagttacggatttttccggattttgtaatccagaaa 134  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||||||  ||| ||||| ||||||||||||||||| |||| |  ||||||||||    
T  42936582 ccttgaagtttccggatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaaggagttacggatttttccagattataaaatccagaaa 42936680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 50716172 - 50716258
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatcc 129  Q
    ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||| ||||||||| ||||| |||||||||||||||    
T  50716172 gtttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattttgtaatcc 50716258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 50796675 - 50796589
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatcc 129  Q
    ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||| ||||||||| ||||| |||||||||||||||    
T  50796675 gtttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattttgtaatcc 50796589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 33700661 - 33700765
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtg--aaaaatgagttacggatttttccggattttgta 125  Q
    ||||| ||||||||| ||||| | |||||||||| |||||||||||||||||||||||||  |||  ||||||| |||||| |||||| ||||||  |||    
T  33700661 caaaaatgtccttgaagtttctggatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaaatgggttacgaattttttcggattacgta 33700760  T
Q  126 atcca 130  Q
    |||||    
T  33700761 atcca 33700765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 34821622 - 34821521
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||||||||||| ||||||||| | ||||||| ||||| ||||| |||||||||||||||||||| ||||  || |||||||||| |||||    
T  34821622 ataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggaattttccggattttgtaatccggaaacttcaaaaaatagggcgcgtt 34821523  T
Q  155 ac 156  Q
    ||    
T  34821522 ac 34821521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 3903043 - 3902959
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatcc 129  Q
    ||||| |||||||||| ||||||||||||||||||||||| |  ||||||| | ||||||| | |||||||||||||||||||||    
T  3903043 ttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaagtggagttactggtttttccggattttgtaatcc 3902959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 33701560 - 33701462
Alignment:
Q  40 ttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaa-gtg---aaaaatgagttacggatttttccggattttgtaatccagaaa 134  Q
    |||| ||||||| ||||| |||| | |||||||||||||||||||||||| |||   |||||||||||||| |||||||||||||  ||||||| ||||    
T  33701560 ttgacgtttccggatttcgtaatccagaatggtgttttcctttgttaaaaggtgaaaaaaaatgagttacgaatttttccggattacgtaatccggaaa 33701462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 44085608 - 44085457
Alignment:
Q  96 aatgagttacggatttttccggattttgtaatccagaaatctcaaaaa--tagggtgcgttacatgannnnnnncaaattacataatccgaaaactctct 193  Q
    ||||||| ||||||||||||| ||| ||||||| | ||||||||||||  ||||||| ||||||| |       || ||||||||||||||| |  | ||    
T  44085608 aatgagtgacggatttttccgaattatgtaatctaaaaatctcaaaaaaatagggtgtgttacat-aatttcttcagattacataatccgaacagcc-ct 44085511  T
Q  194 aaacac--tcttttttcatggtgttgatgctatccggattacgtaatccagaca 245  Q
    ||||||  | ||||||||||||| |||||| |||| ||||||||||||||||||    
T  44085510 aaacaccattttttttcatggtgctgatgcaatccagattacgtaatccagaca 44085457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 52777140 - 52777230
Alignment:
Q  24 ttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaat-gagttacggatttt 112  Q
    |||| ||||| || ||||||||||| || ||||||||||  |||||||||||||||||||||| | | |||||||| ||||||||||||||    
T  52777140 ttttgcaaaaatgcccttgaggttttcggatttcataatctggaatggtgttttcctttgttataggatgaaaaatggagttacggatttt 52777230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 35142010 - 35142112
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaatccagaaatctcaaaaa-tagggtgcgtta 155  Q
    ||||| |||||||||||| || ||||||||| | |||||||  ||| |||||||||||||| ||||||||||| ||||  ||||||| ||||| ||||||    
T  35142010 ataatccggaatggtgttatcttttgttaaagggtgaaaaa--agtaacggatttttccgggttttgtaatccggaaacttcaaaaattagggcgcgtta 35142107  T
Q  156 catga 160  Q
    |||||    
T  35142108 catga 35142112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 8735099 - 8735134
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  8735099 atttcataattcggaatggtgttttcctttgttaaa 8735134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 8735251 - 8735310
Alignment:
Q  192 ctaaacactcttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||||| ||||||||||||||||||||| |||| ||||||| ||| | ||||||||||    
T  8735251 ctaaacacccttttttcatggtgttgatgcaatccagattacgaaattcggacagcacca 8735310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 9087340 - 9087375
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  9087340 atttcataattcggaatggtgttttcctttgttaaa 9087375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 9087492 - 9087551
Alignment:
Q  192 ctaaacactcttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||||| ||||||||||||||||||||| |||| ||||||| ||| | ||||||||||    
T  9087492 ctaaacacccttttttcatggtgttgatgcaatccagattacgaaattcggacagcacca 9087551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 39149791 - 39149845
Alignment:
Q  104 acggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacat 158  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  39149791 acggatttttccggattttgtaatccagaaa-ctcaaaaaatagggcgcgttacat 39149845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 501372 - 501262
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaagt-gaaaaatg-agttacggatttttccggattttgtaatccagaaatctc-aaaaatagggt 149  Q
    |||||||| | | ||||||||||||||||||||| | |  |||||||| ||||| |  |||||||||||||||||||||| |||  || ||||||||||     
T  501372 atttcatattcctgaatggtgttttcctttgttatagggcgaaaaatggagttatgagtttttccggattttgtaatccaaaaacttcaaaaaatagggc 501273  T
Q  150 gcgttacatga 160  Q
    |||||||||||    
T  501272 gcgttacatga 501262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 51540847 - 51540735
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaa-agtg---aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagg 147  Q
    |||| ||||| || |||||||||||| |||||||||  |||   |||||||||| ||||||||||| |||||||| ||||| ||||  || |||||||||    
T  51540847 attttataatccgaaatggtgttttcttttgttaaagggtgaaaaaaaatgagtaacggatttttctggattttggaatccggaaacttcaaaaaatagg 51540748  T
Q  148 gtgcgttacatga 160  Q
    | |||||||||||    
T  51540747 gcgcgttacatga 51540735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 8657803 - 8657750
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||||||| ||||||    
T  8657803 cctgcgtttttttcaaaaatgtccttgaggtttccggatttcataatccggaat 8657750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 47740158 - 47740053
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||||  || ||||||||| ||||||||||||| ||||  || |||||||||| |||||    
T  47740158 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagcaacagatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgtt 47740059  T
Q  155 acatga 160  Q
    ||||||    
T  47740058 acatga 47740053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2358094 - 2358147
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    |||| ||||||| ||||| || |||||||||||||| |||||||||| ||||||    
T  2358094 cctgcgttttttccaaaaatgcccttgaggtttccggatttcataatccggaat 2358147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 3938865 - 3938812
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    |||| ||||||| ||||| || |||||||||||||| |||||||||| ||||||    
T  3938865 cctgcgttttttccaaaaatgcccttgaggtttccggatttcataatccggaat 3938812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 38977967 - 38977870
Alignment:
Q  65 ggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatg 159  Q
    |||||||||||||  ||||||||| | ||||||| | ||| |||||||||||  ||||||||||||| ||||  || |||||||||| ||||||||||    
T  38977967 ggaatggtgttttattttgttaaagggtgaaaaaataagtaacggatttttctagattttgtaatccggaaacttcaaaaaatagggcgcgttacatg 38977870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 45244674 - 45244727
Alignment:
Q  202 ttttttcatggtgttgatgctatccggattacgtaatccagacagcaccatcac 255  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||  ||||||||    
T  45244674 ttttttcatggtgctaatgcaatccggattacgtaatccggacaataccatcac 45244727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 33438492 - 33438560
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||| ||| ||||||||||| | ||||||||||||| |||  || |||||||||| |||||||||||    
T  33438492 aaaaataagtaacggatttttctgaattttgtaatccaaaaacttcaaaaaatagggcgcgttacatga 33438560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 47123046 - 47123126
Alignment:
Q  65 ggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    |||||| ||||||| ||||||||| | ||||||| ||||| |||| |||||||| |||||||||||| ||||  |||||||    
T  47123046 ggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaa 47123126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 47130412 - 47130492
Alignment:
Q  65 ggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    |||||| ||||||| ||||||||| | ||||||| ||||| |||| |||||||| |||||||||||| ||||  |||||||    
T  47130412 ggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaa 47130492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 36359848 - 36359459
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatgg-tgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggat 119  Q
    |||||| ||||| ||  ||| ||||||||| ||||||||||  ||||||| ||||||| ||||||||| | |||||||||||||||||| |||| |||||    
T  36359848 tttttttcaaaaatgctcttaaggtttccggatttcataatctggaatgggtgttttcttttgttaaagggtgaaaaatgagttacggaatttttcggat 36359749  T
Q  120 tttgtaatccagaaatctcaaaaa-tagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacac--tcttttttcatggtgtt 216  Q
    |||||||||||||||||||||||| ||||  |||| ||||||       |  ||||||||||| |||||| | ||||||||  | |||||||||||||||    
T  36359748 tttgtaatccagaaatctcaaaaaataggacgcgtaacatgatttttt-cggattacataatctgaaaaccccctaaacacctttttttttcatggtgtt 36359650  T
Q  217 gatgctatccggattacgtaatccagacagcaccatcac------ttgtgtaaacagagggtgtgatggctggaactaaggcagctgttgttgctactat 310  Q
    ||||| |||| |||||||||||||||||| |||||||||      ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  36359649 gatgcaatccagattacgtaatccagacaacaccatcaccaattcttgtgtaaacagagggtgtgatggctggagctaaggcagttgttgttgctactat 36359550  T
Q  311 tgccactgccattccaactgtaaccactcattccagttgcatttctttctagaagtattgagtccttaaaagttctgtaaaaattaaaatg 401  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36359549 tgccactgtcattccaactgtaaccactccttccagttgcatttctttctagaagtattgagtccttaaaagttctgcaaaaattaaaatg 36359459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 26318973 - 26319202
Alignment:
Q  18 tgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttcc 115  Q
    |||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||| |  ||||||||| |||||||||||||||||    
T  26318973 tgtgttttttccaaaaatgcccttgcggtttccggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttcc 26319072  T
Q  116 ggattttgtaatccagaaatctcaaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactctttttt-catggtg 214  Q
    ||||||||| |||| ||||  || |||||||||||||||||||||       |  |||||||||||||||||| | |||||||| ||||||| |||||      
T  26319073 ggattttgttatccggaaacttccaaaatagggtgcgttacatga-tgtttccggattacataatccgaaaaccccctaaacacccttttttccatgg-- 26319169  T
Q  215 ttgatgctatccggattacgtaatccagacagcacca 251  Q
        ||| ||||||||||||||||||  |||||||||    
T  26319170 ----tgcaatccggattacgtaatccgtacagcacca 26319202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 345
Target Start/End: Original strand, 34440747 - 34440926
Alignment:
Q  175 cataatccgaaaactctctaaacactctttttt---catggtgttgatgctatccggattacgtaatccagacagcaccatcac------ttgtgtaaac 265  Q
    |||||||||||||| | |||||||| |||||||   ||||||| |||||| ||| |||||||||||| |||||||  ||| |||      || ||||||     
T  34440747 cataatccgaaaaccccctaaacaccctttttttttcatggtgctgatgcaatctggattacgtaattcagacagtgccagcaccaattcttatgtaaag 34440846  T
Q  266 agagggtgtgatggctggaactaaggcagctgttgttgctactattgccactgccattccaactgtaaccactcattcca 345  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  34440847 agagggtatgatggctggagctaaggcagctgttgttgctactattgccactgccattccaactctaaccactccttcca 34440926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 25746909 - 25747025
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgttaaaagtgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    ||||||| |||| ||||||||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||  |||||||    
T  25746909 gtttccggattttataattcggaatgatgttttcttttgttaaaagtgaaaaaatgagtaacggatttttccggattttctaatccggaaacttcaaaaa 25747008  T
Q  144 tagggtgcgttacatga 160  Q
    ||||| |||||||||||    
T  25747009 tagggcgcgttacatga 25747025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 26190566 - 26190419
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| ||||||||||||||||  | ||||||||  |||||||||||||||||| |||    ||||||||| |||||||||||||||    
T  26190566 cctgtgtttttttcaaaaatgtccttgaggtttccagacttcataatctggaatggtgttttcctttcttatcgggtgaaaaatggagttacggattttt 26190467  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||||||||| ||||  || ||||||||||||||||||||||    
T  26190466 ccggattttgtaatccggaaacttcaaaaaatagggtgcgttacatga 26190419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 6156615 - 6156731
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaaa 143  Q
    ||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| ||||||||||||||||||||| ||||  || |||||    
T  6156615 ttccggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaa 6156714  T
Q  144 tagggtgcgttacatga 160  Q
    ||||| |||||||||||    
T  6156715 tagggcgcgttacatga 6156731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 31929331 - 31929245
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    ||||| ||||||| ||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  31929331 ataatccggaatgatgttttcttttgttaaagggtgaaaaatgagtaacggatttttccggattttgtaatccagaaatttcaaaaa 31929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 37095168 - 37095036
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatg-agttacggatttttccggattttgtaa 126  Q
    ||||| || ||||||||||| || |||||||||| ||||||||||||| ||||||||| | | ||||||||| |||||||||||||||||||||||||||    
T  37095168 caaaaatgcccttgaggttttcgaatttcataatccggaatggtgttt-cctttgttatagggtgaaaaatggagttacggatttttccggattttgtaa 37095070  T
Q  127 tccagaaatctcaaaaatagggtgcgttacatga 160  Q
    |||  |||  | ||||||| || |||||||||||    
T  37095069 tccgaaaacttaaaaaataaggcgcgttacatga 37095036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 38871531 - 38871718
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag--tgaaaaatgagttacggatttttccggat 119  Q
    |||||| ||||| | |||||||| |||| | |||| ||||| ||||||||||||||| ||||||||||   | |||||||||| ||||||||||||||||    
T  38871531 tttttttcaaaaatatccttgagttttcgg-attttataatccggaatggtgttttcttttgttaaaaagttaaaaaatgagtaacggatttttccggat 38871629  T
Q  120 tttgtaatccagaaatctca-aaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactcttttttca 209  Q
    ||||||||||  |||  ||| ||||||||| |||||||||||       |  |||||||||||||||||| ||||||||| ||||||||||    
T  38871630 tttgtaatccgaaaacttcataaaatagggggcgttacatga-tgtttccggattacataatccgaaaaccctctaaaca-tcttttttca 38871718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 15799109 - 15799225
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatg-agttacggatttttccggattttgtaatccagaaatctc-aaaaa 143  Q
    ||||| |||||||||| ||||||||| ||||||||||||| | | ||||||||| |||||||| ||||||||||||||||||||| ||||  || |||||    
T  15799109 ttccggatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaa 15799208  T
Q  144 tagggtgcgttacatga 160  Q
    ||||| |||||||||||    
T  15799209 tagggcgcgttacatga 15799225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 38640595 - 38640812
Alignment:
Q  38 ccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa---tgagttacggatttttccggattttgtaatccagaa 133  Q
    |||||| ||||||| |||| |||||  |||||||||||||||||||||||| | |||||||   |||| ||| ||  ||| |||||||| |||||  |||    
T  38640595 ccttgaagtttccggattttataatctggaatggtgttttcctttgttaaagggtgaaaaaaaatgagctacagagattttcggattttataatctggaa 38640694  T
Q  134 atctcaaaaa-tagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactctttt-ttcatggtgttgatgctatccggatt 231  Q
    |||||||||| ||||| |||||| ||||       |  ||||||||||||||| || | |||||||| ||||| ||||||||| |||||| |||||||||    
T  38640695 atctcaaaaaatagggcgcgttaaatgatttatt-cggattacataatccgaacaccc-ctaaacaccctttttttcatggtgctgatgcaatccggatt 38640792  T
Q  232 acgtaatccagacagcacca 251  Q
    ||||||||| ||||||||||    
T  38640793 acgtaatccggacagcacca 38640812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 33487477 - 33487578
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaa 126  Q
    ||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| |||||||| |||||||||    
T  33487477 caaaaatgtccttgag-tttccggatttcataatccggaatggtgttttcctttgttacagggtgaaaaatggagttacgggtttttccgaattttgtaa 33487575  T
Q  127 tcc 129  Q
    |||    
T  33487576 tcc 33487578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 4064959 - 4064868
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaa 134  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||| |||||||| ||||    
T  4064959 gtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaa 4064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 27212598 - 27212708
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgtta-aaagtg-aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggt 149  Q
    |||||||||| || | || ||||||||||||||| |  ||| ||||||||||||||| ||||| |||||||||||||||  ||||||| |||||||||||    
T  27212598 atttcataatccgaactgatgttttcctttgttatagggtgaaaaaatgagttacgggttttttcggattttgtaatccgaaaatctcaaaaaatagggt 27212697  T
Q  150 gcgttacatga 160  Q
    |||||||||||    
T  27212698 gcgttacatga 27212708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 43388297 - 43388100
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaa-agtg---aaaaatgagttacggatttttccggattttgtaatccagaaatct-caaaaatagggtgcg 152  Q
    ||||| || ||||||||||||||||||||||  |||   |||||||||||||||||| ||  |||||||||||||| |||||||  |||||||||| ||     
T  43388297 ataatccgaaatggtgttttcctttgttaaagtgtgaaaaaaaatgagttacggattcttttggattttgtaatccggaaatctaaaaaaatagggcgca 43388198  T
Q  153 ttacatgannnnnnncaaat-tacataatccgaaaactctctaaacactc-ttttttcatggtgttgatgctatccggattacgtaatccagacagcacc 250  Q
    ||||||||       || ||  | |||||||||||||   |||||||| | ||||||||||||| |||||| |||||||||||||||| ||||||| |||    
T  43388197 ttacatga---taatcacatcaaaataatccgaaaacctcctaaacaccctttttttcatggtgctgatgcaatccggattacgtaattcagacagtacc 43388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 15957640 - 15957715
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaat 127  Q
    |||| ||||| || |||||||||||| ||||||||| | |||||||||||| | ||||||||||||||||||||||    
T  15957640 attttataatccgaaatggtgttttcttttgttaaagggtgaaaaatgagtaatggatttttccggattttgtaat 15957715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 20891472 - 20891658
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtg--aaaaatgagttacggatttttccgga 118  Q
    |||||| ||||| || ||||||| | |||| |||| ||||| || |||||||||||| ||| |||||  |||  |||||||||| |||||||||||||||    
T  20891472 ttttttccaaaaatgcccttgag-tatccggattttataatccgaaatggtgttttcttttattaaatggtgaaaaaaatgagtaacggatttttccgga 20891570  T
Q  119 ttttgtaatccagaaatctc-aaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactcttttt 206  Q
    ||||||||||| ||||  || ||||||||||   |||||||||       | ||||||||||||||||||| | |||||||| ||||||    
T  20891571 ttttgtaatccggaaacttcaaaaaatagggcatgttacatga-tgtttccgaattacataatccgaaaaccccctaaacacccttttt 20891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 28083604 - 28083499
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tga-aaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||| ||||||||| |||| ||||||||||||||||||||| ||||  || |||||||||| || ||    
T  28083604 ataatccggaatgatgttttcttttgttaaagggtgagaaaatgagtaacgggtttttccggattttgtaatccggaaaattcaaaaaatagggcgcatt 28083505  T
Q  155 acatga 160  Q
    ||||||    
T  28083504 acatga 28083499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 28108277 - 28108354
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaagtga-aaaatgagttacggatttttccggattttgtaatccagaaa 134  Q
    ||||| ||||||| ||||||| ||||||||| |||| ||||||||| |||| ||||||| ||||||||||||| ||||    
T  28108277 ataatccggaatgatgttttcttttgttaaaggtgagaaaatgagtaacgggtttttccagattttgtaatccggaaa 28108354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 12465299 - 12465227
Alignment:
Q  90 gtgaaaaatg-agttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||  || |||||||||| | |||||||||    
T  12465299 gtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatga 12465227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 8739282 - 8739223
Alignment:
Q  192 ctaaacactcttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||||| |||||||||||||| |||||| || |||||||||||||||| || ||||||    
T  8739282 ctaaacacccttttttcatggtgctgatgcaattcggattacgtaatccaaactgcacca 8739223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 24203919 - 24203834
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgttaaaag--tgaaaaatgagttacggatttttccggattttgtaatc 128  Q
    ||||||| |||| ||||| ||||||||||||||| ||||||||| |   ||||||||| | || ||||||| ||||||||||||||    
T  24203919 gtttccggattttataatccggaatggtgttttcttttgttaaagggtggaaaaatgattaacagattttttcggattttgtaatc 24203834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 34529957 - 34530114
Alignment:
Q  93 aaaaatgagttacggatttttc---cggattttgtaatccagaaatctcaaaaa-tagggtgcgttacatgannnnnnn-caaattacataatccgaaaa 187  Q
    ||||||||||| |||||||||    |||||||||||||||| ||| |||||||| ||||| | |||||||||        || |||| | |||||||| |    
T  34529957 aaaaatgagttgcggatttttttttcggattttgtaatccaaaaacctcaaaaaatagggcgtgttacatgattttttttcagattatagaatccgaaca 34530056  T
Q  188 ctctctaaacactcttttttcatggtgttgatgctatccggattacgtaatccagaca 245  Q
    | |||||||||  ||||||| |||||| ||||||  | ||||||||||||||||||||    
T  34530057 cgctctaaacagcctttttttatggtgctgatgcagttcggattacgtaatccagaca 34530114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 40620179 - 40620129
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    |||||||||| || ||||||||||||||||||||||| ||||  |||||||    
T  40620179 aaaaatgagtaacagatttttccggattttgtaatccggaaacttcaaaaa 40620129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 16429109 - 16429158
Alignment:
Q  202 ttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    ||||||||||||| ||||||  | |||||||||||||||| |||||||||    
T  16429109 ttttttcatggtgctgatgcagttcggattacgtaatccaaacagcacca 16429158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 38372241 - 38372282
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaa 134  Q
    |||||||||| ||||||||||| |||||||||||||| ||||    
T  38372241 aaaaatgagtaacggatttttctggattttgtaatccggaaa 38372282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 34440619 - 34440667
Alignment:
Q  38 ccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta 86  Q
    |||||||||||||| ||||||||||  | |||| |||||||||||||||    
T  34440619 ccttgaggtttccgaatttcataatctgaaatgatgttttcctttgtta 34440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 202 - 401
Target Start/End: Complemental strand, 50392513 - 50392311
Alignment:
Q  202 ttttttcatggtgttgatgctatccggattacgtaatccagacagcaccatcac------ttgtgtaaacagagggtgtgatggctggaactaaggcagc 295  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||      |||||||||||||||||||||| |||||| |||||| ||     
T  50392513 ttttttcatggtgctgatgcaatccggattacgtaatccagacagcaccatcaccaattcttgtgtaaacagagggtgtgattgctggagctaaggtag- 50392415  T
Q  296 tgttgttgctactattgccactgccattccaactgtaaccactcattccagttgcatttctttctagaagtattgagtccttaaaagttctgtaaaaatt 395  Q
      ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  50392414 --ttgttgctactattgccactgccattccagctttaaccactccttccagttgcatttctttctagaagtattgagtccttaaaagttcttcaaaaatt 50392317  T
Q  396 aaaatg 401  Q
     |||||    
T  50392316 caaatg 50392311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 46846237 - 46846321
Alignment:
Q  255 cttgtgtaaacagagggtgtgatggctggaactaaggcagctgttgttgctactattgccactgccattccaactgtaaccactc 339  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  46846237 cttgtgcaaacagagggtgtgatggctggagctaaggcagctgttgttgctactattgctactgccattccaactgtaactactc 46846321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 6229073 - 6228932
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggat 119  Q
    |||||| ||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||| |  ||||||||| ||| |||||||||||||||||    
T  6229073 tttttttcaaaaatgtccttgaggtttcaggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagctacggatttttccggat 6228974  T
Q  120 tttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||||| || ||||  || |||||||||| |||||||||||    
T  6228973 tttgtaacccggaaacttcaaaaaatagggcgcgttacatga 6228932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 50392654 - 50392530
Alignment:
Q  40 ttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtgaaaaa--tgagttacggatttttccggattttgtaatccagaaatc 136  Q
    |||||||||||| ||||  |||| ||||| ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  50392654 ttgaggtttccggatttagtaatccggaacggtgttttcctttgttaaagagtgaaaaaaatgagttacggatttttccggattttgtaatccggaaatc 50392555  T
Q  137 tca-aaaatagggtgcgttacatga 160  Q
    ||| ||||| ||| |||||||||||    
T  50392554 tcaaaaaatggggcgcgttacatga 50392530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 49396907 - 49397051
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| ||| |||| |||||||| |||||||||| ||||||| ||||||||||| ||| |  ||||||||| |||||||||||||||    
T  49396907 cctgtgtttttttcaaaaatgttcttggggtttccggatttcataatccggaatgatgttttcctttattatagggtgaaaaatggagttacggattttt 49397006  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttaca 157  Q
    |||||||||||||||| ||||  || ||||||||| |||||||||    
T  49397007 ccggattttgtaatccggaaacttcaaaaaataggatgcgttaca 49397051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 32441710 - 32441857
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| |  |||||||||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| |||||| ||||||||    
T  32441710 cctgtgtttttttcaaaaatacccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttaaggattttt 32441809  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    | |||||||||||||| ||||  || |||||||| | |||||||||||    
T  32441810 ctggattttgtaatccggaaacttcaaaaaatagcgcgcgttacatga 32441857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 23523805 - 23523952
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    ||||| |||||| ||||| || ||||||| |||  | |||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||||||    
T  23523805 cctgtatttttttcaaaaatgcccttgagattttaggatttcataattcggaatgatgttttcctttgttagagggtgaaaaatggagttacggattttt 23523904  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
     ||||||||||||||| ||||  || |||||||||  |||||||||||    
T  23523905 tcggattttgtaatccggaaacttcaaaaaataggacgcgttacatga 23523952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 25539209 - 25539087
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggat 119  Q
    |||||| ||||| ||||| |||| |||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||    
T  25539209 ttttttccaaaaatgtccctgag-tttccggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggat 25539111  T
Q  120 tttgtaatccagaaatctcaaaaa 143  Q
    |||||||||| ||||  |||||||    
T  25539110 tttgtaatccggaaacttcaaaaa 25539087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 6003941 - 6003821
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    ||||| |||||| ||||| | ||||||||||||| | |||||||||| |||||||||| |||||||||||| |  ||||||||| |||||||||||||||    
T  6003941 cctgtatttttttcaaaaatatccttgaggtttctggatttcataatccggaatggtggtttcctttgttatagggtgaaaaatggagttacggattttt 6003842  T
Q  114 ccggattttgtaatccagaaa 134  Q
     || ||||| |||||| ||||    
T  6003841 tcgaattttataatccggaaa 6003821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 55052858 - 55052758
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctcaaaa 142  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| |||||||||||| |||||||| ||||  ||||||    
T  55052858 gtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaacttcaaaa 55052759  T
Q  143 a 143  Q
    |    
T  55052758 a 55052758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 19835461 - 19835566
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaa-tctcaaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||||| |||| ||||||||||||||||||||| |||| | | ||||||||||||||||    
T  19835461 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaactttgaaaaatagggtgcgtt 19835560  T
Q  155 acatga 160  Q
    ||||||    
T  19835561 acatga 19835566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 34972786 - 34972871
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttt 112  Q
    ||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||||||||    
T  34972786 caaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttt 34972871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 38536099 - 38536216
Alignment:
Q  46 tttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaatg-agttacggatttttccggattttgtaatccagaaatctc-aaaa 142  Q
    |||||| |||||||||| || |||||||||||||||||||| |  |||||||||| |||||||| ||||||||||||||||||| | ||||  || ||||    
T  38536099 tttccggatttcataatccgaaatggtgttttcctttgttatagggtgaaaaatgaagttacgggtttttccggattttgtaattcggaaacttcaaaaa 38536198  T
Q  143 atagggtgcgttacatga 160  Q
    |||||| | |||||||||    
T  38536199 atagggcgtgttacatga 38536216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 3703505 - 3703403
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtg-aaaaatgagttacggatttttccggattttgtaa 126  Q
    ||||| || |||||| ||||||| |||||||||| || | | |||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||||    
T  3703505 caaaaatgcccttgaagtttccggatttcataatccgaactagtgttttcctttgttatagggtgaaaaaatgagttacggattttttcggattttgtaa 3703406  T
Q  127 tcc 129  Q
    |||    
T  3703405 tcc 3703403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 40703645 - 40703710
Alignment:
Q  96 aatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||    
T  40703645 aatgagtaacggatttttccggattttgtaatccggaaatttcaaaaaatagggtgcattacatga 40703710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 17933356 - 17933258
Alignment:
Q  65 ggaatggtgttttcctttgttaaaag-tg-aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||| ||||||| ||||||||| | || |||||||| | |||||||||||| ||||||||||||||||||  || |||||||||| |||||||||||    
T  17933356 ggaatgatgttttcttttgttaaagggtgcaaaaatgaataacggatttttccagattttgtaatccagaaacttcaaaaaatagggcgcgttacatga 17933258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 29822550 - 29822647
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatg-agttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    ||||| ||||||||||  |||||||||||| ||||||||| | | ||||||||| |||||||| ||||||||||||||||||||| ||||  |||||||    
T  29822550 ttccggatttcataatatggaatggtgttt-cctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaa 29822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 25752633 - 25752565
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| | |||||||||||||||||||||||| ||||| || |||||||||| || ||||||||    
T  25752633 aaaaatgagtaatggatttttccggattttgtaatccggaaatttcaaaaaatagggcgcattacatga 25752565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 54631689 - 54631584
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaagt--gaaaaatgagttacggatttttccggattttgtaatccagaaatctcaaaaa-tagggtgcgtt 154  Q
    ||||| |||||||  |||||| ||||||||| |   ||||||||||| |||| ||||||||||||||||||||| ||||  ||||||| || || |||||    
T  54631689 ataatccggaatgacgttttcttttgttaaagggtggaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaagtatggcgcgtt 54631590  T
Q  155 acatga 160  Q
    ||||||    
T  54631589 acatga 54631584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 48319253 - 48319186
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| ||||||||||||||| |||||||||| ||||  || |||||||||| |||||||||||    
T  48319253 aaaaatgagtgacggatttttccgga-tttgtaatccggaaacttcaaaaaatagggcgcgttacatga 48319186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 7931636 - 7931702
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacat 158  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||  || |||||||||| |||||||||    
T  7931636 aaaaatgagtaacgggtttttccggattttgcaatccggaaacttcaaaaaatagggcgcgttacat 7931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 42660504 - 42660430
Alignment:
Q  38 ccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtg-aaaaatgagttacggatt 110  Q
    |||||| ||||||| |||| ||||| | |||| ||||||||||||||||||  ||| ||||||||||||||||||    
T  42660504 ccttgaagtttccggattttataatccagaatagtgttttcctttgttaaagggtgaaaaaatgagttacggatt 42660430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 25491621 - 25491516
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||||| |||  ||||| ||||||||||||||| ||||  || |||||||||  |||||    
T  25491621 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgagttttttcggattttgtaatccggaaacttcaaaaaataggacgcgtt 25491522  T
Q  155 acatga 160  Q
    ||||||    
T  25491521 acatga 25491516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 27631848 - 27631901
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    |||||||||||| ||||| || |||||||||||||  |||||||||| ||||||    
T  27631848 cctgtgttttttccaaaaatgcccttgaggtttccagatttcataatccggaat 27631901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 53894217 - 53894112
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||| | |||| ||||||||||||||| ||||  ||||  || |||||||||| |||||    
T  53894217 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgactaacgggtttttccggattttgcaatcaggaaacttcaaaaaatagggcgcgtt 53894118  T
Q  155 acatga 160  Q
    ||||||    
T  53894117 acatga 53894112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 41530573 - 41530803
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaagt--gaaaaatgagttacggatttttccggattttgtaa 126  Q
    ||||| || |||||| ||||| | |||| ||||| ||||||| ||||||||||||||||| |   ||||||||||||||||||||||||| |||||||||    
T  41530573 caaaaatgcccttgaagtttctggattttataatccggaatgatgttttcctttgttaaagggtggaaaaatgagttacggatttttccgaattttgtaa 41530672  T
Q  127 tccagaaatctc-aaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactc-ttttttcatggtgttgatgctat 224  Q
    ||| |||||||| |||||||||| |||||||||||       || ||||||||||| ||| || | ||||| || | ||||||||||||| || ||| ||    
T  41530673 tccggaaatctcaaaaaatagggcgcgttacatgatttttttcagattacataatctgaacaccccctaaaaaccctttttttcatggtgctgttgcaat 41530772  T
Q  225 ccggattacgtaatccagacagcaccatcac 255  Q
    |||||||||||||||| |||| |||||||||    
T  41530773 ccggattacgtaatccggacatcaccatcac 41530803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 21004281 - 21004426
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| || |||||||||||||  |||||||||| ||||||||||||||||||||||| |  ||||||||| |||||||||||||||    
T  21004281 cctgtgtttttttcaaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttt 21004380  T
Q  114 ccggattttgtaatccagaaa-tctcaaaaatagggtgcgttacat 158  Q
    |||||||||||||||| |||| | | ||||||| || |||||||||    
T  21004381 ccggattttgtaatccggaaactttaaaaaataaggcgcgttacat 21004426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 3094603 - 3094719
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaaa 143  Q
    ||||| |||| ||||||||||||||||||||||||||||| |  ||||||||| ||||||||| ||||||||||||||||||||| ||||  || |||||    
T  3094603 ttccgcatttaataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaa 3094702  T
Q  144 tagggtgcgttacatga 160  Q
    ||||| || ||||||||    
T  3094703 tagggcgcattacatga 3094719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 7971252 - 7971027
Alignment:
Q  29 caaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatg-agttacggatttttccggattttgtaa 126  Q
    ||||| || |||||||||||||  ||||||||||   |||||| ||||||||| |||| | | ||||||| | |||||||||||||||||||||||||||    
T  7971252 caaaaatgcccttgaggtttccagatttcataatctagaatggcgttttccttcgttatagggtgaaaaacggagttacggatttttccggattttgtaa 7971153  T
Q  127 tccagaaatctcaaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactctttttt-catggtgttgatgctatc 225  Q
    ||  ||||  |||||||||||  ||| ||| |||          |||||||||||| || || |  ||||||| ||||||| ||||||| |||||| |||    
T  7971152 tctggaaacttcaaaaataggacgcgctacgtgatgttttctggattacataatccaaacaccccataaacacccttttttccatggtgctgatgcaatc 7971053  T
Q  226 cggattacgtaatccagacagcacca 251  Q
    ||||||||||||||| ||||||||||    
T  7971052 cggattacgtaatccggacagcacca 7971027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 229
Target Start/End: Complemental strand, 36404391 - 36404208
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctca-aaaa 143  Q
    ||||| |||| ||||| |||||||| |||| ||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||  |||||||| ||||    
T  36404391 ttccggattttataatccggaatggagtttccctttgttaaagggtgaaaaaatgagttacggattattccggattttgtaatccgaaaatctcaaaaaa 36404292  T
Q  144 tagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaacactc-ttttttcatggtgttgatgctatccgga 229  Q
    ||||| | |||||||||       |  |||| ||||||||||||||| |||||||| | ||||||||||||| |||||| |||||||    
T  36404291 tagggcgtgttacatga--tttttcggattatataatccgaaaactc-ctaaacaccctttttttcatggtgctgatgcaatccgga 36404208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 31520112 - 31520013
Alignment:
Q  64 cggaatggtgttttcctttgttaaaag-tgaaaaatg-agttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||||||||||||||||||||| | | ||||||||| |||||||| ||||||||||||||||||||||||||  || |||||||| | |||||||||||    
T  31520112 cggaatggtgttttcctttgttatagggtgaaaaatggagttacggctttttccggattttgtaatccagaaacttcaaaaaatagagcgcgttacatga 31520013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 8885679 - 8885574
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaa-agtgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| ||||  || |||||||||| |||||    
T  8885679 ataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgtt 8885580  T
Q  155 acatga 160  Q
    ||||||    
T  8885579 acatga 8885574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 42676509 - 42676565
Alignment:
Q  345 agttgcatttctttctagaagtattgagtccttaaaagttctgtaaaaattaaaatg 401  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  42676509 agttgcatttctttctagaagtattgaatcctgaaaagttctgcaaaaattaaaatg 42676565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 16310527 - 16310637
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggt 149  Q
    |||||||||| | |||||||||||||||||||||    ||||||||| ||||||| | ||||||||||||||||||||| ||||  || |||||||||||    
T  16310527 atttcataatccagaatggtgttttcctttgttatggggtgaaaaatggagttacaggtttttccggattttgtaatccggaaacttcaaaaaatagggt 16310626  T
Q  150 gcgttacatga 160  Q
    |||||| ||||    
T  16310627 gcgttagatga 16310637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 44106143 - 44106261
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaa 141  Q
    ||||||| |||| |||||   ||||||||||||| ||||||||| | ||||||| ||||| |||||||||||| ||||||||||||| ||||  || |||    
T  44106143 gtttccggattttataatctagaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccagattttgtaatccggaaacttcaaaa 44106242  T
Q  142 aatagggtgcgttacatga 160  Q
    ||||||| |||||||||||    
T  44106243 aatagggcgcgttacatga 44106261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 27928130 - 27928062
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| |||||||||||||||||||||||||| ||||  || |||||||||| |||||||||||    
T  27928130 aaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatga 27928062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 37248478 - 37248564
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatcc 129  Q
    ||||||| |||||| ||| | ||||||||||||||||||||| |  ||||||||| ||||||||| |||||| ||||||||||||||    
T  37248478 gtttccggatttcaaaatccagaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttctggattttgtaatcc 37248564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 24627649 - 24627698
Alignment:
Q  202 ttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    ||||||||||||| |||||| |||||||||||||||||| |||| |||||    
T  24627649 ttttttcatggtgctgatgcaatccggattacgtaatccggacaacacca 24627698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 9845250 - 9845314
Alignment:
Q  177 taatccgaaaactctctaaacactcttttttcatggtgttgatgctatccggattacgtaatcca 241  Q
    ||||||||| || | ||||||||| |||||||||||||||||| |  | ||||||||||||||||    
T  9845250 taatccgaacaccccctaaacacttttttttcatggtgttgatacagttcggattacgtaatcca 9845314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 28916722 - 28916821
Alignment:
Q  64 cggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||||| ||||||| ||||||||| | ||||||| || || |||| ||||||||||||||||||||| ||||  || |||||||||| |||||| ||||    
T  28916722 cggaatgatgttttcttttgttaaagggtgaaaaaatgggtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttaaatga 28916821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 24628066 - 24628112
Alignment:
Q  202 ttttttcatggtgttgatgctatccggattacgtaatccagacagca 248  Q
    ||||||||| ||||| |||| |||||||||||||||| |||||||||    
T  24628066 ttttttcattgtgttaatgcaatccggattacgtaattcagacagca 24628112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 34853263 - 34853367
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaagtga--aaaatgagttacggatttttccggattttgtaatcc-agaaatctcaaaaatagggtgcgtt 154  Q
    ||||||||||||| ||||||  ||||||||| |  |  |||||||| ||||| ||||||||||||||||||||| | || | | |||||||||| |||||    
T  34853263 ataattcggaatgatgttttattttgttaaagggtaagaaaatgag-tacgggtttttccggattttgtaatccgaaaactttaaaaaatagggcgcgtt 34853361  T
Q  155 acatga 160  Q
    ||||||    
T  34853362 acatga 34853367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 31519367 - 31519420
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    |||| ||||||| ||||| || |||||||||||||| |||||||||| ||||||    
T  31519367 cctgcgttttttccaaaaatgcccttgaggtttccggatttcataatccggaat 31519420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 42281120 - 42281047
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatcc 129  Q
    ||||| ||||||| ||||||  ||||||||| | ||||||| ||||| |||||||||||||||||| |||||||    
T  42281120 ataatccggaatgatgtttttttttgttaaagggtgaaaaaatgagtaacggatttttccggatttcgtaatcc 42281047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 3305026 - 3304879
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| |||| ||||| |||||| ||||||||||| |||||||||||||||||||||| |  ||||||||| |||||||||||||||    
T  3305026 cctgtgtttttt-caaaaatgtctttgagatttccggatttcataatttggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttt 3304928  T
Q  114 ccggattttgtaatccagaaa--tctcaaaaatagggtgcgttacatga 160  Q
    |||||||||||||||||||||  ||  |||||||||||| |||||||||    
T  3304927 ccggattttgtaatccagaaacttcaaaaaaatagggtgtgttacatga 3304879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 6467594 - 6467735
Alignment:
Q  23 tttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtgaaaaatgagttacggatttttccggattt 121  Q
    ||||| ||||| || |||||| ||||||| |||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||     
T  6467594 tttttccaaaaatgcccttgaagtttccggattttatgattcggaatggtgttttcctttgttaaatggtgaaaaatgagttacggatttttccgaatta 6467693  T
Q  122 tgt--aatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||  |||||||||||||| |||||||||||| |||||||||    
T  6467694 tgtaaaatccagaaatctcaaaaaatagggtgtgttacatga 6467735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 47202385 - 47202532
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| || |||||||||||||| |||||||||| ||||||||||||||| ||||||| |  ||||||||| |||||||||||||||    
T  47202385 cctgtgtttttttcaaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcttttgttatagggtgaaaaatggagttacggattttt 47202484  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    || |||||||||||||  |||  || |||||||||| |||||||||||    
T  47202485 ccagattttgtaatccgaaaacttcaaaaaatagggcgcgttacatga 47202532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 24042419 - 24042309
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggt 149  Q
    ||||||||||||||||||||||||||||||| || |  ||||||||| ||||||||| ||||||||||||||||||||| ||||  || ||||||| ||     
T  24042419 atttcataattcggaatggtgttttcctttgatatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaataaggc 24042320  T
Q  150 gcgttacatga 160  Q
    |||||||||||    
T  24042319 gcgttacatga 24042309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 43737060 - 43737162
Alignment:
Q  61 attcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttaca 157  Q
    |||||||||||||||||| ||||||||| | ||||||| ||||| |||||||||||||||||||||||||| ||||  || |||||||||| ||||||||    
T  43737060 attcggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttaca 43737159  T
Q  158 tga 160  Q
    |||    
T  43737160 tga 43737162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 28346063 - 28346167
Alignment:
Q  40 ttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtgaaaaatgagttacggatttttccggattttgtaatccagaaatctc 138  Q
    |||| ||||| | ||||||||||  |||||| ||||||||||||||||| ||  ||||||||||||||||| |||||| |||||||||||||||||  ||    
T  28346063 ttgaagtttctgaatttcataatctggaatgatgttttcctttgttaaagagaaaaaaatgagttacggatgtttccgaattttgtaatccagaaacttc 28346162  T
Q  139 aaaaa 143  Q
    |||||    
T  28346163 aaaaa 28346167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 42925878 - 42925762
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaaa 143  Q
    ||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| ||||||| ||||||||||||| ||||  || |||||    
T  42925878 ttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttcctgattttgtaatccggaaacttcaaaaaa 42925779  T
Q  144 tagggtgcgttacatga 160  Q
    ||||| || ||||||||    
T  42925778 tagggcgcattacatga 42925762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 36468766 - 36468691
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaagtgaaaaa-tgagttacggatttttccggattttgtaat 127  Q
    |||| ||||||||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  36468766 attttataattcggaatgatgttttcttttgttaaaggtgaaaaaatgagtaacggatttttccggattttgtaat 36468691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 3936041 - 3936146
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaa-agtgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| ||||  || |||||||||| |||||    
T  3936041 ataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgtt 3936140  T
Q  155 acatga 160  Q
    ||||||    
T  3936141 acatga 3936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 28230698 - 28230593
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtg 150  Q
    |||| ||||| | ||||||||||||| ||||||||| | | |||||||||| |||||||||||||||||||||||||| ||||  || |||||||||| |    
T  28230698 attttataatccagaatggtgttttcttttgttaaagggtaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcg 28230599  T
Q  151 cgttac 156  Q
    ||||||    
T  28230598 cgttac 28230593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 31642954 - 31643079
Alignment:
Q  38 ccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaat 135  Q
    |||||||||||||| ||||||||||  |||||||||||||| ||||||| |  ||||||||| |||||||||||||||| |||| |||||||   ||||     
T  31642954 ccttgaggtttccggatttcataatctggaatggtgttttcgtttgttatagggtgaaaaatggagttacggatttttctggatcttgtaatttggaaac 31643053  T
Q  136 ctc-aaaaatagggtgcgttacatga 160  Q
     || |||||||||||| |||||||||    
T  31643054 ttcaaaaaatagggtgtgttacatga 31643079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 19225825 - 19225719
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggattttt-ccggattttgtaatccagaaatctc-aaaaatagggtgcgt 153  Q
    |||||||| |||| ||||||| ||||||||| | ||||||| ||||| |||||||||| ||||||||||||||||| |||  || |||||||||||||||    
T  19225825 ataattcgaaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttccggattttgtaatccaaaaacttcaaaaaatagggtgcgt 19225726  T
Q  154 tacatga 160  Q
    |||||||    
T  19225725 tacatga 19225719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 33574288 - 33574155
Alignment:
Q  35 tgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta------aaagtgaaaaatga-gttacggatttttccggattttgtaat 127  Q
    ||||| |||||||||||  ||||||||| ||| ||||||||||||||||||       | |||||||||||| |||| ||||||||  ||||||||||||    
T  33574288 tgtccatgaggtttccgggtttcataatccgggatggtgttttcctttgttttgttatagagtgaaaaatgaagttatggatttttttggattttgtaat 33574189  T
Q  128 ccagaaa-tctcaaaaatagggtgcgttacatga 160  Q
    || |||| | | ||||||||||||||||||||||    
T  33574188 ccggaaactttaaaaaatagggtgcgttacatga 33574155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 8154865 - 8154983
Alignment:
Q  90 gtgaaaaatga-gttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaa 187  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||  || |||||||||| |||||||||||       |  |||||||||||||||||    
T  8154865 gtgaaaaatgaagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatga-tgtttccggattacataatccgaaaa 8154963  T
Q  188 ctctctaaacactctttttt 207  Q
    | | |||||||| |||||||    
T  8154964 ccccctaaacaccctttttt 8154983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 36408341 - 36408391
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctcaaaaa 143  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  36408341 aaaaatgagtaacggatttttccggattttgtaatccagaaacttcaaaaa 36408391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 28349323 - 28349237
Alignment:
Q  45 gtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatcc 129  Q
    ||||||| ||||||||||  | ||||||||||| |||||||||| | ||||||| ||||||||| ||||||| | ||||||||||||    
T  28349323 gtttccggatttcataatcggaaatggtgtttttctttgttaaatggtgaaaaaatgagttacgaatttttctgaattttgtaatcc 28349237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 37518484 - 37518416
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||| ||| ||||||||||||||||||| |||||||||||  || |||||||||| | |||||||||    
T  37518484 aaaaataagtaacggatttttccggattttataatccagaaacttcaaaaaatagggcgtgttacatga 37518416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 36629175 - 36629210
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatc 128  Q
    |||||||||| |||||||||||||||||||||||||    
T  36629175 aaaaatgagtaacggatttttccggattttgtaatc 36629210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 5731278 - 5731220
Alignment:
Q  193 taaacactcttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||||  ||||||||||||| || |||| ||||||||||||||||  ||||||||||    
T  5731278 taaacaccattttttcatggtgctggtgctgtccggattacgtaatcgggacagcacca 5731220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 8155571 - 8155530
Alignment:
Q  21 gttttttacaaaattgtccttgaggtttccgtatttcataat 62  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||    
T  8155571 gttttttccaaaaatgtccttgaggtttccggatttcataat 8155530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 42877271 - 42877199
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatc 128  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||||| |||  ||||||||||||||||||||    
T  42877271 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgtgtttttccggattttgtaatc 42877199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 47203160 - 47203112
Alignment:
Q  21 gttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    ||||||| ||||| || |||||||||||||| |||||||||| ||||||    
T  47203160 gttttttccaaaaatgcccttgaggtttccggatttcataatccggaat 47203112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 33413608 - 33413468
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggat 119  Q
    |||||| ||||| || | |||| ||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| |||||||| ||||||| | ||    
T  33413608 ttttttccaaaaatgcctttgatgtttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgaatttttctgaat 33413509  T
Q  120 tttgtaatccagaaatctcaaaaatagggtgcgttacatga 160  Q
    |||||||||| ||||  |||||||||||| |||||||||||    
T  33413508 tttgtaatccggaaacttcaaaaatagggcgcgttacatga 33413468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 5638770 - 5638878
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||| ||||||| ||||| || |||||||||||||| |||||||||| ||||||||||||||||| ||||| |  ||||||||| |||||||||||||||    
T  5638770 cctgcgttttttccaaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcctctgttatagggtgaaaaatagagttacggattttt 5638869  T
Q  114 ccggatttt 122  Q
    |||||||||    
T  5638870 ccggatttt 5638878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 32035027 - 32035151
Alignment:
Q  39 cttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaatg-agttacggatttttccggattttgtaatccagaaatc 136  Q
    |||||||||| || ||||||||||  |||||| ||||||| ||||||| | | ||||||||| |||||||||||||||||||||||||||||| ||||      
T  32035027 cttgaggttttcggatttcataatctggaatgatgttttcttttgttatatgatgaaaaatggagttacggatttttccggattttgtaatccggaaact 32035126  T
Q  137 tc-aaaaatagggtgcgttacatga 160  Q
    || |||||||||| |||||||||||    
T  32035127 tcaaaaaatagggcgcgttacatga 32035151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 5699456 - 5699596
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggat 119  Q
    ||||||| |||| |||| ||||| |||||| |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||| ||||| || ||    
T  5699456 ttttttaaaaaaatgtctttgag-tttccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggttttttcgaat 5699554  T
Q  120 tttgtaatccagaaa-tctcaaaaatagggtgcgttacatga 160  Q
    |||||||||| |||| |   |||||||||| |||||||||||    
T  5699555 tttgtaatccggaaacttgaaaaaatagggcgcgttacatga 5699596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 4508562 - 4508423
Alignment:
Q  23 tttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtg-aaaaatgagttacggatttttccggatt 120  Q
    ||||| ||||| ||||||| || |||||| |||| ||||| | ||||||||||||| ||||||| |  ||| |||||||||| |||||||||||||||||    
T  4508562 tttttccaaaaatgtccttaag-tttccggattttataatccagaatggtgttttcttttgttagagggtgaaaaaatgagtaacggatttttccggatt 4508464  T
Q  121 ttgtaatccagaaatctcaaaaa-tagggtgcgttacatga 160  Q
    || |||||||||||| ||||||| ||||| | |||||||||    
T  4508463 ttataatccagaaatttcaaaaattagggcgtgttacatga 4508423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 2813487 - 2813345
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccgg-- 117  Q
    |||||| ||||| ||| |||||| || ||| |||||||||||||||||||||||||||||| ||| |  ||||||||| ||||||| |||||||||||      
T  2813487 tttttttcaaaaatgttcttgagctt-ccggatttcataattcggaatggtgttttcctttattatagggtgaaaaatggagttacagatttttccggat 2813389  T
Q  118 attttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||||| ||||  || ||||||| |||| |||||||||    
T  2813388 attttgtaatccggaaacttcaaaaaataaggtgtgttacatga 2813345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 1945718 - 1945652
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctcaaaaa-tagggtgcgttacat 158  Q
    |||||||||||||||||||||||||||||||||||||  |||  ||||||| |||||||||||||||    
T  1945718 aaaaatgagttacggatttttccggattttgtaatccgaaaacttcaaaaactagggtgcgttacat 1945652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 17264380 - 17264448
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| |||||||||||||||||||||||||  ||||  || |||||||||| |||||||||||    
T  17264380 aaaaatgagtaacggatttttccggattttgtaatctggaaacttcaaaaaatagggcgcgttacatga 17264448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 23406717 - 23406829
Alignment:
Q  46 tttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaa 142  Q
    |||||| ||||| |||| ||||||||||||||||||||||| |  ||||||||| ||||||||  |||||||| |||| ||||||| ||||  || ||||    
T  23406717 tttccggatttcgtaatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgagtttttccgaatttcgtaatccggaaacttcaaaaa 23406816  T
Q  143 atagggtgcgtta 155  Q
    |||||| ||||||    
T  23406817 atagggcgcgtta 23406829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 7412768 - 7412866
Alignment:
Q  65 ggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||| ||||||| ||||||||| | ||||||| ||||| |||| ||||||||||||||||||||| ||||  || |||||||||| | |||||||||    
T  7412768 ggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatga 7412866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 3717544 - 3717404
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggat 119  Q
    |||||| ||||| || ||||||| |||||| |||| |||||   ||||||||||||| ||||||||| | ||||||| ||||| | ||  ||||||| ||    
T  3717544 ttttttccaaaaatgcccttgag-tttccggattttataatcttgaatggtgttttcttttgttaaagggtgaaaaaatgagtaatgggcttttccgaat 3717446  T
Q  120 tttgtaatccagaaatctcaaaaa-tagggtgcgttacatga 160  Q
    |||||||||| ||||  ||||||| ||||| |||||||||||    
T  3717445 tttgtaatccggaaacttcaaaaattagggcgcgttacatga 3717404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 24604617 - 24604501
Alignment:
Q  30 aaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtg--aaaaatgagttacggatttttccggattttgtaa 126  Q
    |||| ||||||||| |||| || |||||||| | || | |||||||||||||||| | |  |||  |||||||||||| ||||||||||| |||||||||    
T  24604617 aaaaatgtccttgaagttttcggatttcatattccgaactggtgttttcctttgtcatagggtgaaaaaaatgagttaaggatttttccgaattttgtaa 24604518  T
Q  127 tccagaaatctcaaaaa 143  Q
    |||| |||  |||||||    
T  24604517 tccaaaaacttcaaaaa 24604501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 14587749 - 14587681
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatcc-agaaatctcaaaaatagggtgcgttacatga 160  Q
    |||||||||| | |||||||||||||||||||||||| | || | | |||||||||| |||||||||||    
T  14587749 aaaaatgagtaagggatttttccggattttgtaatccgaaaactttaaaaaatagggcgcgttacatga 14587681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 36949208 - 36949061
Alignment:
Q  16 cctgtgttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggattttt 113  Q
    |||||||||||| ||||| ||   |||||||||||  |||||||||| ||||||||||||||||||||||| |  ||||||||| |||||||||||||||    
T  36949208 cctgtgtttttttcaaaaatgcatttgaggtttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttt 36949109  T
Q  114 ccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||||||||   |||  || |||||||||| |||||||||||    
T  36949108 ccggattttgtaatctgcaaacttcaaaaaatagggcgcgttacatga 36949061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 9847682 - 9847450
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtgaaaaa-tgagttacggatttttccggat 119  Q
    |||||| ||||| || | |||| ||||||| |||| |||||  |||||||  |||| |||||||||| ||||||||| |||||||| ||||||||| |||    
T  9847682 tttttttcaaaaatgcctttgaagtttccggattttataatctggaatggcatttttctttgttaaagagtgaaaaaatgagttactgatttttccagat 9847583  T
Q  120 tttgtaatccagaaatctca-aaaatagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaaca-ctcttttttcatggtgttg 217  Q
    ||||||||||  |||||||| ||||| ||| |||||||||||       |  ||||||||||||||| ||  || ||||| || ||||||||||||| ||    
T  9847582 tttgtaatccgaaaatctcaaaaaattgggcgcgttacatga-ttttttcgtattacataatccgaacaccatccaaacaccttttttttcatggtgctg 9847484  T
Q  218 atgctatccggattacgtaatccagacagcacca 251  Q
    |||| ||| |||||||||||||  ||||||||||    
T  9847483 atgcaatctggattacgtaatctggacagcacca 9847450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 25715260 - 25715489
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtg-aaaaatgagttacgga--tttttccgg 117  Q
    |||||| ||||| || |||||| ||||||| |||| ||||| |||||||||||||||||||||||||  ||| |||||||||||||  |  ||||| |||    
T  25715260 tttttttcaaaaatgcccttgaagtttccggattttataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttacaaattttttttcgg 25715359  T
Q  118 attttgtaatccagaaatctcaaaa-atagggtgcgttacatgannnnnnncaaattacataatccgaaaactctctaaaca-ctcttttttcatggtgt 215  Q
    | ||||||||||| ||||||||||| |||||| ||||||| |||       |  ||||||||||||||| ||     ||||| |  |||||||||||||     
T  25715360 actttgtaatccaaaaatctcaaaagatagggcgcgttacctga-ttttttcggattacataatccgaacac-----aaacaccatttttttcatggtgc 25715453  T
Q  216 tgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||| |||||||||||||||||| |||| |||||    
T  25715454 tgatgcaatccggattacgtaatccggacaacacca 25715489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 17475006 - 17474915
Alignment:
Q  72 tgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaa-tctcaaaaatagggtgcgttacatga 160  Q
    ||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||| | | |||||||||| |||||||||||    
T  17475006 tgttttcttttgttaaaaggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaactttaaaaaatagggcgcgttacatga 17474915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 34517016 - 34517139
Alignment:
Q  40 ttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtg-aaaaatgagttacggatttttccggattttgtaatccagaaatct 137  Q
    |||| |||| || |||||||| | || | |||||||||||||||||| |  ||| |||||||||||||| |||||| |||||||||||||| | ||||||    
T  34517016 ttgaagttttcggatttcatattccgaactggtgttttcctttgttatacggtgaaaaaatgagttacgaattttttcggattttgtaatcgaaaaatct 34517115  T
Q  138 c-aaaaatagggtgcgttacatga 160  Q
    | |||||||||| |||||||||||    
T  34517116 caaaaaatagggcgcgttacatga 34517139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 25218016 - 25217906
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggt 149  Q
    |||| ||||| || |||| ||||||| ||||||||| | ||||||| ||||| |||||||||| ||||||||||||||| ||||  || |||||||||||    
T  25218016 attttataatccgcaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttcggattttgtaatccggaaacttcaaaaaatagggt 25217917  T
Q  150 gcgttacatga 160  Q
    |||||||||||    
T  25217916 gcgttacatga 25217906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 44465941 - 44465844
Alignment:
Q  66 gaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||| ||||||| ||||||||| | ||||||| ||||| |||||||||||||||||||||||||| ||||  || |||||||||| |||||||||||    
T  44465941 gaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatga 44465844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 39447101 - 39447168
Alignment:
Q  64 cggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatcc 129  Q
    ||||||| ||||||| ||||||||| | ||||||| ||||| ||||||||||||||||||||||||||    
T  39447101 cggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatcc 39447168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 33452664 - 33452559
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaagt--gaaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| || |||| ||||||| ||||||||| |   ||||||||||| ||||||||||| |||||||||||| | ||||  || |||||||||| |||||    
T  33452664 ataatccgaaatgatgttttcttttgttaaagggtggaaaaatgagtaacggatttttctggattttgtaattcggaaacttcaaaaaatagggcgcgtt 33452565  T
Q  155 acatga 160  Q
    ||||||    
T  33452564 acatga 33452559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 15995340 - 15995263
Alignment:
Q  53 atttcataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatc 128  Q
    |||| ||||| ||||||||||||||| ||||||||| | ||||||| | ||| |||| ||||||||||||||||||||    
T  15995340 attttataatccggaatggtgttttcttttgttaaagggtgaaaaaattagtaacgggtttttccggattttgtaatc 15995263  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 34519628 - 34519567
Alignment:
Q  190 ctctaaacactcttttttcatggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||||||| |||||||||||||| |||||   |||||||||||||||||| || ||||||    
T  34519628 ctctaaacacccttttttcatggtgctgatgtagtccggattacgtaatccaaactgcacca 34519567  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 41510612 - 41510544
Alignment:
Q  93 aaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    |||||||||| |||||||||||| ||||| ||||||| ||||  || |||||||||| |||||||||||    
T  41510612 aaaaatgagtaacggatttttccagatttcgtaatccggaaacttcaaaaaatagggcgcgttacatga 41510544  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 5507315 - 5507436
Alignment:
Q  24 ttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgtta-aaagtg-aaaaatgagttacggatttttccggattt 121  Q
    |||| ||||| || |||||| |||| ||  ||||||||| || | | |||||||||||||||| |  ||| ||||||||||||| ||||||| || ||||    
T  5507315 tttttcaaaaatgcccttgaagttttcgggtttcataatccgaactagtgttttcctttgttatatggtgaaaaaatgagttacagattttttcgaattt 5507414  T
Q  122 tgtaatccagaaatctcaaaaa 143  Q
    ||||||||| |||  |||||||    
T  5507415 tgtaatccaaaaacttcaaaaa 5507436  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 45154012 - 45153907
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtt 154  Q
    ||||| ||||||| ||||||| ||||||||| | ||||||| ||||| |||| |||||| | |||||||||||  ||||  || |||||||||| |||||    
T  45154012 ataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttctgaattttgtaatctggaaacttcaaaaaatagggcgcgtt 45153913  T
Q  155 acatga 160  Q
    ||||||    
T  45153912 acatga 45153907  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 36948605 - 36948653
Alignment:
Q  21 gttttttacaaaattgtccttgaggtttccgtatttcataattcggaat 69  Q
    ||||||| ||||| |||||||||||||| || |||||||||| ||||||    
T  36948605 gtttttttcaaaaatgtccttgaggttttcgaatttcataatccggaat 36948653  T

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Target: scaffold0137 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 9734 - 9618
Alignment:
Q  47 ttccgtatttcataattcggaatggtgttttcctttgtta-aaagtgaaaaat-gagttacggatttttccggattttgtaatccagaaatctc-aaaaa 143  Q
    ||||| ||||||||||||||||| |||||||||||||||| |  ||||||||| ||||||||| |||||||| |||||||||||| ||||  || |||||    
T  9734 ttccggatttcataattcggaattgtgttttcctttgttatagggtgaaaaatagagttacgggtttttccgaattttgtaatccggaaacttcaaaaaa 9635  T
Q  144 tagggtgcgttacatga 160  Q
    ||||  |||||||||||    
T  9634 taggacgcgttacatga 9618  T

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Target: scaffold0027 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 142188 - 142084
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgtta 155  Q
    ||||||||||||| ||||||| ||||||||| | ||||||||| || || ||||||||| ||||||||||||| ||||  || |||||||||| ||||||    
T  142188 ataattcggaatgatgttttcttttgttaaagggtgaaaaatgtgtaacagatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgtta 142089  T
Q  156 catga 160  Q
    |||||    
T  142088 catga 142084  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 23089 - 23160
Alignment:
Q  90 gtgaaaaatgagttacggatttttccggattttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||||||||||| ||||||||||||| ||||| |||||| ||||  || ||||||||||||| ||||||||    
T  23089 gtgaaaaatgagtaacggatttttccgaattttataatccggaaacttcaaaaaatagggtgcattacatga 23160  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 140541 - 140612
Alignment:
Q  58 ataattcggaatggtgttttcctttgttaaaag-tgaaaaa-tgagttacggatttttccggattttgtaat 127  Q
    ||||| ||||||| ||||||| ||||||||||| ||||||| ||||| | ||||||||||||||||||||||    
T  140541 ataatccggaatgatgttttcttttgttaaaaggtgaaaaaatgagtaaaggatttttccggattttgtaat 140612  T

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Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 3658 - 3516
Alignment:
Q  22 ttttttacaaaattgtccttgaggtttccgtatttcataattcggaatggtgttttcctttgttaaa-agtg-aaaaatgagttacgga--tttttccgg 117  Q
    |||||| ||||| || ||||||| |||||| || | ||||| ||||||||||||||| |||||||||  ||| |||||||||| ||| |  ||||| ||     
T  3658 ttttttccaaaaatgcccttgag-tttccgaatcttataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacgaattttttttcga 3560  T
Q  118 attttgtaatccagaaatctc-aaaaatagggtgcgttacatga 160  Q
    ||||||||||| |||||  || |||||||||| |||||||||||    
T  3559 attttgtaatctagaaacttcaaaaaatagggcgcgttacatga 3516  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 205883 - 205841
Alignment:
Q  209 atggtgttgatgctatccggattacgtaatccagacagcacca 251  Q
    |||||||| |||| ||||||||||||||||||||||| |||||    
T  205883 atggtgttaatgcaatccggattacgtaatccagacatcacca 205841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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