View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6449_high_6 (Length: 379)
Name: NF6449_high_6
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6449_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 25243809 - 25244161
Alignment:
| Q |
14 |
tcatcagtggcattgagctggtttttctggcttgtcatgaatcatcctagcgtggaggagaagattctagcagagttaacggcggttttggctgaaactc |
113 |
Q |
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| T |
25243809 |
tcatcagtggcattgagctggtttttctggcttgtcatgaatcatcctagcgtggaggagaagattctagcagagttaacggcggttttggctgaaactc |
25243908 |
T |
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| Q |
114 |
gcggtggtgattctcgccggtggacggaggaagccgtggattttgaggaagcagagaagcttgtttatctaaaagctgcatt-ggctgagacactaagac |
212 |
Q |
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| T |
25243909 |
gcggtggtgattctcgccggtggacggaggaagccgtggattttgaggaagcagagaagcttgtttatctaaaagctgcattgggctgagacactaagac |
25244008 |
T |
|
| Q |
213 |
tatatccttcggtgccggaggatttcaaatatgcggtcgacgacgatgttttaccagacggaacggtggttccggcgggttcaacagtgacatattcgat |
312 |
Q |
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| T |
25244009 |
tatatccttcggtgccggaggatttcaaatatgcggtcgacgacgatgttttaccagacggaacggtggttccggcgggttcaacggtgacatattcgat |
25244108 |
T |
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| Q |
313 |
atattcagttggaagaatgaagagtgtatggggtgaagattgcatggaattta |
365 |
Q |
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| T |
25244109 |
atattcagttggaagaatgaagagtgtatggggtgaagattgcatggaattta |
25244161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 365
Target Start/End: Original strand, 29669224 - 29669335
Alignment:
| Q |
254 |
gacgatgttttaccagacggaacggtggttccggcgggttcaacagtgacatattcgatatattcagttggaagaatgaagagtgtatggggtgaagatt |
353 |
Q |
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| T |
29669224 |
gacgatgttttccccgatggaacggtgattccagcgggttcaactgttacatattccatttattctgttgggaggatggagaaaatatggggggaagatt |
29669323 |
T |
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| Q |
354 |
gcatggaattta |
365 |
Q |
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| T |
29669324 |
gcttggaattta |
29669335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 334
Target Start/End: Complemental strand, 41065346 - 41065188
Alignment:
| Q |
176 |
gtttatctaaaagctgcattggctgagacactaagactatatccttcggtgccggaggatttcaaatatgcggtcgacgacgatgttttaccagacggaa |
275 |
Q |
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||||||||||||||||||||| | ||||| || |||| || ||||| |||||| |||||| || ||| ||| | ||||||||||||||| |||||| |
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| T |
41065346 |
gtttatctaaaagctgcattgtccgagactttacgactttacccttccgtgccgcaggattcaaagcatgtggtgaatgacgatgttttaccaaacggaa |
41065247 |
T |
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| Q |
276 |
cggtggttccggcgggttcaacagtgacatattcgatatattcagttggaagaatgaag |
334 |
Q |
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| | |||||||| ||||| | |||||||||||||| || || ||||| || |||||| |
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| T |
41065246 |
catttgttccggctggttctatggtgacatattcgatttactcggttgggaggatgaag |
41065188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 11315322 - 11315466
Alignment:
| Q |
176 |
gtttatctaaaagctgcattggctgagacactaagactatatccttcggtgccggaggatttcaaatatgcggtcgacgacgatgttttaccagacggaa |
275 |
Q |
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|||||||| |||||||| ||| | ||||||||||| || || ||||||||||| ||||||| || ||| ||| | ||||| || || || || |||| |
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| T |
11315322 |
gtttatcttaaagctgccttgtcggagacactaaggctgtacccttcggtgccagaggattcaaagcatgtggtgaaggacgacgtgttgccggatggaa |
11315421 |
T |
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| Q |
276 |
cggtggttccggcgggttcaacagtgacatattcgatatattcag |
320 |
Q |
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| T |
11315422 |
cctttgttccggctggatcatcggtgacatattcgatatattcag |
11315466 |
T |
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