View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6449_low_4 (Length: 426)
Name: NF6449_low_4
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6449_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 43246415 - 43246813
Alignment:
| Q |
1 |
cagcaattagggcctggactaccgttgatagtgcaaatctatggatatttgttacatgacacagagattctgttttgtttcagggaaatgaagtggtttg |
100 |
Q |
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| T |
43246415 |
cagcaattagggcctggactacctttgatattgcaaatctttggatatttgttacatgacacagagattctgttttgtttccgggaaaggaagtggcttg |
43246514 |
T |
|
| Q |
101 |
ttccttggagagagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagc---caaagccattagcaaggtcacaaggaaaagggtctt |
197 |
Q |
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| T |
43246515 |
ttccttggagagagtttggttcttcgtttttagaagatgttgctgatgatagtgtaatagcgcccaaagccattagcaaggtcacaaggaaaagggtctt |
43246614 |
T |
|
| Q |
198 |
gatgaacttcattgtttttgtgtttaaagctatgtatgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatgttttgaatgaga |
297 |
Q |
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| T |
43246615 |
gatgaacttcattgtttttgtgtttaaagctatgtatgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatgttttgaatgaga |
43246714 |
T |
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| Q |
298 |
aggataagaagaaatggtaggtatttatagaagagagggaggtctatggataatatcataaatttttcatatagaatgcaatttcatgcatgggataat |
396 |
Q |
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| T |
43246715 |
aggataagaagaaatggtaggtatttatagaagagagggaggtcgatggataatatcataaatttttcatatagaatgcaatttcatgcatgggataat |
43246813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 8541136 - 8541395
Alignment:
| Q |
34 |
caaatctatggatatttgttacatgacacagagattctgttttgtttcagggaaatgaagtggtttgttccttggagaga---gtttggttcttcgtttt |
130 |
Q |
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| T |
8541136 |
caaatctttgggtatttgtcacaggacatagatattctattttgttttcggttaaggaagtagcttgttccttgaagagaagagtttggttcatcgttta |
8541235 |
T |
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| Q |
131 |
tagaagatgttgctgatgatagtgtaatagccaaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcattgtttttgtgtttaaagctat |
230 |
Q |
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| T |
8541236 |
aggaagatgttgctgatgatagtgtaatggccaaaaccattagcaaggccagaagaaaaagggtattgatgaacttcat--tttttgtgtttaaagc--- |
8541330 |
T |
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| Q |
231 |
gtatgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatgttttgaatgagaag |
299 |
Q |
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| T |
8541331 |
-taggagaggtaaaagaaagttggaaatgagtaa---taatacttggtagatatgttttgaatgagaag |
8541395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 8551631 - 8551811
Alignment:
| Q |
33 |
gcaaatctatggatatttgttacatgacacagagattctgttttgtttcagggaaatgaagtggtttgttccttggag---agagtttggttcttcgttt |
129 |
Q |
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| T |
8551631 |
gcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggttgaggaagtggcttgttccttgaagtgaagagtttggttcttcgttt |
8551730 |
T |
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| Q |
130 |
ttagaagatgttgctgatgatagtgtaatagccaaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcatt |
210 |
Q |
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| T |
8551731 |
tcggaagatgttgctgatgatagtgtaatggccaaagccattagcaaggccagaagaaaaagggtattgatgaacttcatt |
8551811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 8532865 - 8533048
Alignment:
| Q |
33 |
gcaaatctatggatatttgttacatgacacagagattctgttttgtttcagggaaatgaagtggtttgttccttggag---agagtttggttcttcgttt |
129 |
Q |
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| T |
8532865 |
gcaaatcttgggatatttgtcacatgtgagagagattctatattgtttgcggttgaggaagtggcttgttccttgaagtgaagagtttggttcttcgttt |
8532964 |
T |
|
| Q |
130 |
ttagaagatgttgctgatgatagtgtaatagccaaagcc---attagcaaggtcacaaggaaaagggtcttgatgaacttcatt |
210 |
Q |
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| T |
8532965 |
tcagaagatgatgctgatgatggtgtaacggtcaaagccataattaacaaggtcacaaggaaaagagtcttcatggacttcatt |
8533048 |
T |
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