View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6449_low_8 (Length: 274)
Name: NF6449_low_8
Description: NF6449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6449_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 26477 - 26716
Alignment:
| Q |
19 |
ggtatggatacgtacttgaaaccattgcaagctactcgatatgcaaaatctcttgtggaggagtcctcaaacccataaacatcagaaagaagcaataggc |
118 |
Q |
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| T |
26477 |
ggtatggatacgtacttgaaaccattgcaagctactcgatatgcaaaatctcttgtggaggagtcctcaaacccataaacatcagaaagaagcaataggc |
26576 |
T |
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| Q |
119 |
caattccattgttattttttactgccttgaaaagataagcatgaacattatcatcgccatcctctaatgaaagctcctctccactgactaattcacatgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26577 |
caattccattgttattttttactgccttgaaaagataagcatgaacattatcatcgccatcctctaacgaaagctcctctccactgactaattcacatgc |
26676 |
T |
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| Q |
219 |
atcatcatctatcacactttccacattcagtaaactacat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26677 |
atcatcatctatcacactttccacattcagtaaactacat |
26716 |
T |
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