View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_high_11 (Length: 295)
Name: NF6450_high_11
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_high_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 8294216 - 8294494
Alignment:
| Q |
15 |
caacacattgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8294216 |
caacacattgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgt |
8294315 |
T |
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| Q |
115 |
aggaaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagtttcattacagtccaaaaattcagtgttct |
214 |
Q |
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| T |
8294316 |
aggaaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagtttcattacagtccaaaaattcagtgttct |
8294415 |
T |
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| Q |
215 |
tttatagcctgagtacaaaaattgtacttccccttagaacaccactgtggaagaacactgataaatgtgttggctcagttg |
295 |
Q |
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| T |
8294416 |
tttatagcctgagtacaaaaattgtacttccccttagaacaccac--tggaagaacactgataaatgtgttggctcagttg |
8294494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 30148693 - 30148928
Alignment:
| Q |
21 |
attgataaatctacctgttgatgtgttggaattgattat---gaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtagg |
117 |
Q |
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| T |
30148693 |
attgacaaatctaccggtcgatgtgttggaattgatgattctgaaccgcttgccccttaaagattggcttggattaagggcaacctgtcgttcttgtagg |
30148792 |
T |
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| Q |
118 |
aaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagtttcattacagtccaaaaattcagtgttctttt |
217 |
Q |
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| T |
30148793 |
aaa--acagtttctaatttcattgaaaacaagcgttgctgc----catttacctgaactgccattagttttcctgaaatccaaaaaatcaaggttccttt |
30148886 |
T |
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| Q |
218 |
atagcctgagtacaaaaattgtacttccccttagaacaccac |
259 |
Q |
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| T |
30148887 |
atagcttgggtacaaaaagtgtacatcgcattagaacaccac |
30148928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 30153414 - 30153649
Alignment:
| Q |
21 |
attgataaatctacctgttgatgtgttggaattgattat---gaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtagg |
117 |
Q |
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| T |
30153414 |
attgacaaatctaccggtcgatgtgttggaattgatgattctgaaccgcttgccccttaaagattggcttggattaagggcaacctgtcgttcttgtagg |
30153513 |
T |
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| Q |
118 |
aaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagtttcattacagtccaaaaattcagtgttctttt |
217 |
Q |
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| T |
30153514 |
aaa--acagtttctaatttcattgaaaacaagcgttgctg----tcatttacctgaactgccattagttttcctgaaatccaaaaaatcaaggttccttt |
30153607 |
T |
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| Q |
218 |
atagcctgagtacaaaaattgtacttccccttagaacaccac |
259 |
Q |
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| T |
30153608 |
atagcttgggtacaaaaagtgtacatcgcattagaacaccac |
30153649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 25741476 - 25741348
Alignment:
| Q |
29 |
atctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatt |
128 |
Q |
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||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||||||||||||| | | || |
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| T |
25741476 |
atctacccgttgatgtgttggaattgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtaggaaa--atagtt |
25741379 |
T |
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| Q |
129 |
tctaatgtcattgaaaacaagcattgctgcc |
159 |
Q |
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|| ||| ||||||||||||| |||||||||| |
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| T |
25741378 |
tcgaatatcattgaaaacaaacattgctgcc |
25741348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 25756222 - 25756086
Alignment:
| Q |
21 |
attgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaa |
120 |
Q |
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| T |
25756222 |
attgacaaatctaccagttgatgtgttggaaatgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtcgggaa |
25756123 |
T |
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| Q |
121 |
acacaatttctaatgtcattgaaaacaagcattgctgcc |
159 |
Q |
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| T |
25756122 |
--acagtttccaatatcattgaaaacaagcattgctgcc |
25756086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 40462819 - 40462655
Alignment:
| Q |
17 |
acacattgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtag |
116 |
Q |
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||||||||| ||||||||| || |||||||| || |||||| |||||||||| ||||||| |||||||||| | ||| |||||||||| |||||||| || |
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| T |
40462819 |
acacattgacaaatctaccagtcgatgtgtttgagttgattctgaagcgtttgccccttagagattgccttggtttaagagcaatatgtcgttcttgcag |
40462720 |
T |
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| Q |
117 |
gaaaacacaatttctaatgtcattgaaaacaagcattgctgccatgcatttacctgaattgccactagttt |
187 |
Q |
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| T |
40462719 |
gaaaactg--tttctaatgtcattgaaaacaaacattactgc----catttacctgaactgccactagttt |
40462655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 25733775 - 25733647
Alignment:
| Q |
29 |
atctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaaacacaatt |
128 |
Q |
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||||||| | ||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||| ||||||| |||||||||||||||||| | | || |
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| T |
25733775 |
atctacccgctgatgtgttggaactgattatgaagcgtttgcccctaaaagattaccttagattgagagcaatttgccgttcttgtaggaaa--atagtt |
25733678 |
T |
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| Q |
129 |
tctaatgtcattgaaaacaagcattgctgcc |
159 |
Q |
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|| ||| |||||||||||||||||||||||| |
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| T |
25733677 |
tcgaatatcattgaaaacaagcattgctgcc |
25733647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 25747654 - 25747518
Alignment:
| Q |
21 |
attgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaa |
120 |
Q |
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| T |
25747654 |
attgacaaatctaccagtcgatgtgttggagatgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtaggaaa |
25747555 |
T |
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| Q |
121 |
acacaatttctaatgtcattgaaaacaagcattgctgcc |
159 |
Q |
| |
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|| |||| || | |||||||||||||||||||||| |
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| T |
25747554 |
--acggtttccaaaatgattgaaaacaagcattgctgcc |
25747518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 25764180 - 25764042
Alignment:
| Q |
16 |
aacacattgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgta |
115 |
Q |
| |
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|||| ||||| ||||||||| ||||||||||||||| ||||||||||||||| || |||||||||| ||||||||| |||| || || ||||||||| |
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| T |
25764180 |
aacatattgacaaatctaccagttgatgtgttggaacggattatgaagcgtttgcctcttaaagattaccttagattgagagcgatttgtcgttcttgtc |
25764081 |
T |
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| Q |
116 |
ggaaaacacaatttctaatgtcattgaaaacaagcattgct |
156 |
Q |
| |
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|| || ||| |||| ||| ||||||||||||||||||||| |
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| T |
25764080 |
gggaa--acagtttccaatatcattgaaaacaagcattgct |
25764042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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