View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_high_12 (Length: 294)
Name: NF6450_high_12
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 31215637 - 31215906
Alignment:
| Q |
18 |
acactggtctaatgctttgcccaactagccacagtaaaaagagacacgagatcctccttctagtattgtttgtcatcttaggtgctctagtactagtatt |
117 |
Q |
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| T |
31215637 |
acactggtctaatgctttgcccaactagccacagtaaaaagagacacgagatcctccttctagtattgtttgtcatcttaggtgctctagtactagtatt |
31215736 |
T |
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| Q |
118 |
ttgtgggttgggaatttcaatgtatattatttatcggagagcaagaaagacaaaaaacaaggataaagattctaatgaagcacaagcagaagaagtcttt |
217 |
Q |
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| T |
31215737 |
ttctgggttgggaatttcaatgtatattatttatcggagagcaagaaagacaaaaaacaaggataaagattctaatgaagcacaagcagaagaagtcttt |
31215836 |
T |
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| Q |
218 |
tccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatgatg |
287 |
Q |
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| T |
31215837 |
tccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatgatg |
31215906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 31058594 - 31058649
Alignment:
| Q |
215 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctac |
270 |
Q |
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| T |
31058594 |
ttttccatttggagtcatgatggaaaaatgatgtttgaaaatattattgaagctac |
31058649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 31140397 - 31140467
Alignment:
| Q |
215 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
285 |
Q |
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| T |
31140397 |
ttttccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatga |
31140467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 31153412 - 31153482
Alignment:
| Q |
215 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
285 |
Q |
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| T |
31153412 |
ttttccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatga |
31153482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 31103038 - 31103108
Alignment:
| Q |
215 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
285 |
Q |
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| T |
31103038 |
ttttcgatttggagccatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatga |
31103108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 31184130 - 31184191
Alignment:
| Q |
224 |
tggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatga |
285 |
Q |
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| T |
31184130 |
tggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatga |
31184191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 37027180 - 37027232
Alignment:
| Q |
215 |
ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagc |
267 |
Q |
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| T |
37027180 |
ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagc |
37027232 |
T |
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