View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_high_17 (Length: 238)
Name: NF6450_high_17
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41658486 - 41658265
Alignment:
| Q |
1 |
aattcaacaaatattgatatcagtcttcattgactatcatttttgcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658486 |
aattcaacaaatattgatatcagtcttgattgactatcatttttgcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattg |
41658387 |
T |
|
| Q |
101 |
ctaaaagtgcttcttaagaaactgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccag |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658386 |
ctaaaagtgcttcttaagaaattgaatgtgaaggagttaggcagagaaagagaacacgccttaatggatacgatgtcattaggctttgtttactacccag |
41658287 |
T |
|
| Q |
201 |
cttgtcctgaacctgaactagt |
222 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
41658286 |
cttgtcctgcacctgaactagt |
41658265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 14628782 - 14628571
Alignment:
| Q |
9 |
aaatattgatatcagtcttcattgactatcattttt-gcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaag |
107 |
Q |
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||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
14628782 |
aaatattgatatcagtcttgattgactatctttttttgcaggaatcaagcactagaatatatgaaatatgctgacgcttttattagaaagttgctaaaag |
14628683 |
T |
|
| Q |
108 |
tgcttcttaagaaactgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcc |
207 |
Q |
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||||||||||||||||||||||||||||||||| | ||||| |||| ||||||| | | ||| ||||||||| ||||||||| |||||||| |
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| T |
14628682 |
tgcttcttaagaaactgaatgtgaaggagttagacaaagaaagagaatacgcgttaatgggtgcaatgatattaggcttcaattactaccctgcttgtcc |
14628583 |
T |
|
| Q |
208 |
tgaacctgaact |
219 |
Q |
| |
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|||||||||||| |
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|
| T |
14628582 |
tgaacctgaact |
14628571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 14644587 - 14644376
Alignment:
| Q |
9 |
aaatattgatatcagtcttcattgactatcattttt-gcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaag |
107 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
14644587 |
aaatattgatatcagtcttgattgactatctttttttgcaggaatcaagcactagaatatatgaaatatgctgacgcttttattagaaaattgctacaag |
14644488 |
T |
|
| Q |
108 |
tgcttcttaagaaactgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcc |
207 |
Q |
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||||||||||||||||||||||||| ||||||| | |||||||||| ||||||| | | ||| ||||||||| ||||||||| |||||||| |
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| T |
14644487 |
tgcttcttaagaaactgaatgtgaacgagttagacaaagaaagagaacacgctttaatgggtgcaatgatattaggcttcaattactaccctgcttgtcc |
14644388 |
T |
|
| Q |
208 |
tgaacctgaact |
219 |
Q |
| |
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|||||||||||| |
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|
| T |
14644387 |
tgaacctgaact |
14644376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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