View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_high_2 (Length: 598)
Name: NF6450_high_2
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 8294139 - 8293547
Alignment:
| Q |
1 |
aaataagtataagtttcttttgattatgatgtaaaaggatcactaaagtatcttgacatcactatatnnnnnnnn---ggaattccaactagtatacttg |
97 |
Q |
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| T |
8294139 |
aaataagtataagtttcttttgattttgatgtaaaaggatcactaaagtgtcttgacatcactatataaaaaaaaaaaggaattccaactagtatacttg |
8294040 |
T |
|
| Q |
98 |
tatttannnnnnn-cactgaaccactgcagaatacttgtcccttgcaaatattagtaataaaaatactgctcagaagactaagacggagaaagctcgaaa |
196 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || || |
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| T |
8294039 |
tatttattttttttcactgaaccactgcagaatacttgtcccttgcaaatattagtaataaaaatactgctcagaagactatgacgaagaaagtgcggaa |
8293940 |
T |
|
| Q |
197 |
aataacatcatcactgatcagagctccaatatgatgtggaagggatattcatattacacacataaaactaatagcagtaactcataactatataaaaaca |
296 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293939 |
aataacatcgtcactgatcagagctccaatatgatgtggaagggatattcatattacacacataaaactaatagcagtaactcataactatataaaaaca |
8293840 |
T |
|
| Q |
297 |
acagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattctacatttgtt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293839 |
acagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattctacatttgtt |
8293740 |
T |
|
| Q |
397 |
attnnnnnnntagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaaaatatctgg |
496 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293739 |
attaaaaaaatagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaaaatatctgg |
8293640 |
T |
|
| Q |
497 |
aatcagagaaattaacacggaagagaagag-aaaaataaatggacacataagatttaccagtttcaatcaattgtaagcagctccacaggttc |
588 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8293639 |
aatcagagaaattaacacggaagagaagagaaaaaataaatggacacataagatttaccagtttcagtcaattgtaagcagctccacaggttc |
8293547 |
T |
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