View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6450_high_7 (Length: 377)
Name: NF6450_high_7
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_high_7 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 13392421 - 13392782
Alignment:
| Q |
3 |
aaattgtcagcggaagaggttggaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaactttggtgactttgataaa |
102 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13392421 |
aaattgtaagtggaagaggtttgaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaacttttgtgactttgataaa |
13392520 |
T |
|
| Q |
103 |
tagttatgttact-atgttcttgaaatgttaaaagatcatgtattggtcaaatagaagaggtcaagcaaatagtcttttaattctaatgaatacttttga |
201 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13392521 |
tagttatgttactgatattcttgaaatgttaaaagatcatgtattggtcaaatagaagaggtcaagcaaatagtcttttaattctaatgaatacttttga |
13392620 |
T |
|
| Q |
202 |
ttttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtcaatgttatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13392621 |
ttttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattgaaaaggaaagattaagacatcgtcaatgttatg |
13392720 |
T |
|
| Q |
302 |
aacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatgagaatgttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13392721 |
aacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatgagaatgttt |
13392782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 354
Target Start/End: Original strand, 4815271 - 4815631
Alignment:
| Q |
3 |
aaattgtcagcggaagaggttggaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaactttggtgactttgataa- |
101 |
Q |
| |
|
||||||| || |||||||||| ||| |||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4815271 |
aaattgttagtggaagaggtttgaaccaagaacctaatatgaagcgttctgatgatactcgttggagttctcactttgcaactttggtgaacttgatatt |
4815370 |
T |
|
| Q |
102 |
-----atagttatgttact-atgttcttgaaatgttaaaagatcatgtattggtcaaata--gaagaggtcaagcaaatagtcttttaattctaatgaat |
193 |
Q |
| |
|
|||||| | | ||| |||||||||||||||| | |||| |||||| | ||| | |||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
4815371 |
gatgtatagttctataactgatgttcttgaaatgttgagagatgatgtatcaattaaagatggaagaggtgaagcaaaaagtcttttaattctcatgaat |
4815470 |
T |
|
| Q |
194 |
acttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtca |
293 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
4815471 |
acttttgattttgcactcacattgcatttgatgaaaaagatcttaggtttttcaaatgaattgtcacaagcattgcaaaggaaagatcaagacatcgtca |
4815570 |
T |
|
| Q |
294 |
atgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatg |
354 |
Q |
| |
|
||| ||||||| | ||| ||||| |||| ||| ||||||| ||| ||||||||||||||| |
|
|
| T |
4815571 |
atgctatgaacctaattagcatcaaaaaggagcgattacaagctctaagagatgatggatg |
4815631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 358
Target Start/End: Original strand, 23599507 - 23599871
Alignment:
| Q |
3 |
aaattgtcagcggaagaggttggaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaactttggtgactttgataa- |
101 |
Q |
| |
|
||||||| || |||||||||| ||||||||||| |||||||| | || | ||||| |||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
23599507 |
aaattgttagtggaagaggtttgaatcaagaaagaaatatgaaaggtgttgctcatactcgttggagttctcactttggagctttggtgaatttgatatt |
23599606 |
T |
|
| Q |
102 |
-----atagttatgttact-atgttcttgaaatgttaaaagatcatgtattggtcaaata--gaagaggtcaagcaaatagtcttttaattctaatgaat |
193 |
Q |
| |
|
|||||| ||| | | |||||||| | ||||| |||||| |||| |||||| | |||||||| ||| |||| |||||||| || |||||||| |
|
|
| T |
23599607 |
gatgtatagttctgtaattgatgttcttaatatgttgaaagatgatgttacagtcaaagatggaagaggtgaagaaaatggtcttttacttttaatgaat |
23599706 |
T |
|
| Q |
194 |
acttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtca |
293 |
Q |
| |
|
| ||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||| | | ||| || |||||||||||| |
|
|
| T |
23599707 |
aattttgattttgcaatcacattgcatttgatgaaaaaagtcttgggtatttcaaataatttgtcacaaacattgcagataaaaaatcaagacatcgtca |
23599806 |
T |
|
| Q |
294 |
atgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatgagaa |
358 |
Q |
| |
|
||| |||||| ||||||||||| ||||| || |||||||||| ||||||||||| ||||||| |
|
|
| T |
23599807 |
atgctatgaatttggttaacattacaaaagagttgttacaaactctaagagatgatgaatgagaa |
23599871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 165 - 359
Target Start/End: Original strand, 10068494 - 10068688
Alignment:
| Q |
165 |
aagcaaatagtcttttaattctaatgaatacttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatc |
264 |
Q |
| |
|
|||||||| ||||| || || | ||||||| ||||||||||||||| | ||||||||| |||||||||||||| || || |||||| ||||||| ||| |
|
|
| T |
10068494 |
aagcaaatggtcttatacttttgatgaatatttttgattttgcactaacattacatttaatgaaaaaagtcttaggcatctcaaatgaattgtcgcaaat |
10068593 |
T |
|
| Q |
265 |
attggaaaggaaagattaagacatcgtcaatgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatgagaat |
359 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||| |||| | |||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10068594 |
attgcaaaggaaagatcaagacattgtcaatgctatgcaactggttagcatcacaaagaaacaattacaaactcttagagatgatggatgagaat |
10068688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 354
Target Start/End: Original strand, 29637887 - 29638247
Alignment:
| Q |
3 |
aaattgtcagcggaagaggttggaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaactttggtgactttgataa- |
101 |
Q |
| |
|
||||||| || |||||||||| ||| |||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29637887 |
aaattgttagtggaagaggtttgaaccaagaacctaatatgaagcgttctgctgatactcgttggagttctcactttgcaactttggtgaacttgatatt |
29637986 |
T |
|
| Q |
102 |
-----atagttatgttact-atgttcttgaaatgttaaaagatcatgtattggtcaaata--gaagaggtcaagcaaatagtcttttaattctaatgaat |
193 |
Q |
| |
|
|||||| | | ||| |||||||||||||||| | |||| |||||| | ||| | |||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
29637987 |
gatgtatagttctataactgatgttcttgaaatgttgagagatgatgtatcaattaaagatggaagaggtgaagcaaaaggtcttttaattctcatgaat |
29638086 |
T |
|
| Q |
194 |
acttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtca |
293 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||||| | | |||||||| ||||||||||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
29638087 |
acttttgattttgcactcacattgcatttgatgaaaaaggtcttagatttttcaaatgaattgtcacaagcattgcaaaggaaagatcaagacattgtca |
29638186 |
T |
|
| Q |
294 |
atgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatg |
354 |
Q |
| |
|
||| ||||||| | |||| |||||||||| ||| ||||||| || ||||||||||||||| |
|
|
| T |
29638187 |
atgctatgaacctagttagcatcacaaaggagcgattacaagctttaagagatgatggatg |
29638247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 10353209 - 10353322
Alignment:
| Q |
197 |
tttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtcaatg |
296 |
Q |
| |
|
|||||||||||| ||| ||| ||| |||||||||| ||||| ||||| ||| || ||||||| ||| || | ||||| ||||| |||||||| | || | |
|
|
| T |
10353209 |
tttgattttgcattcacattgcatatgatgaaaaatgtcttgggtatatcatatgaattgtcgcaaacaattgaaagaaaagaccaagacatcattaaag |
10353308 |
T |
|
| Q |
297 |
ttatgaacttggtt |
310 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
10353309 |
ttatgaatttggtt |
10353322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 354
Target Start/End: Complemental strand, 676671 - 676311
Alignment:
| Q |
3 |
aaattgtcagcggaagaggttggaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaactttggtgactttgataa- |
101 |
Q |
| |
|
||||||| || |||||||||| ||| |||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
676671 |
aaattgttagtggaagaggtttgaaccaagaacctaatatgaagcgttctgctgatactcgttggagttctcactttgcaactttggtgaacttgatatt |
676572 |
T |
|
| Q |
102 |
-----atagttatgttact-atgttcttgaaatgttaaaagatcatgtattggtcaaata--gaagaggtcaagcaaatagtcttttaattctaatgaat |
193 |
Q |
| |
|
|||||| | | ||| |||||||||||||||| | |||| |||||| | ||| | |||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
676571 |
gatgtatagttctataactgatgttcttgaaatgttgagagatgatgtatcaattaaagatggaagaggtgaagcaaaaggtcttttaattctcatgaat |
676472 |
T |
|
| Q |
194 |
acttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtca |
293 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| ||||| | | |||||||| ||||||||||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
676471 |
acttttgattttgcactcacattgcatttgatgaaaaaggtcttagatttttcaaatgaattgtcacaagcattgcaaaggaaagatcaagacattgtca |
676372 |
T |
|
| Q |
294 |
atgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatg |
354 |
Q |
| |
|
||| ||||||| | |||| |||||||||| ||| ||||||| || ||||||||||||||| |
|
|
| T |
676371 |
atgctatgaacctagttagcatcacaaaggagcgattacaagctttaagagatgatggatg |
676311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 354
Target Start/End: Complemental strand, 41500922 - 41500724
Alignment:
| Q |
156 |
gaagaggtcaagcaaatagtcttttaattctaatgaatacttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaatt |
255 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||| ||||| ||| |||||||| |||| |
|
|
| T |
41500922 |
gaagaggtgaagcaaaaggtcttttaattctcatgaatacttttgattttgcactcacattgcatttaatgaaaaaggtcttaggtttttcaaatgaatt |
41500823 |
T |
|
| Q |
256 |
gtcacaatcattggaaaggaaagattaagacatcgtcaatgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatg |
354 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||| ||||||| | ||| |||||||||| ||| ||||||| ||| ||||||||||||||| |
|
|
| T |
41500822 |
gtcacaagcattgcaaaggaaagatcaagacatcgtcaatgctatgaacctaattagcatcacaaaggagcgattacaagctctaagagatgatggatg |
41500724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 358
Target Start/End: Original strand, 12158338 - 12158702
Alignment:
| Q |
3 |
aaattgtcagcggaagaggttggaatcaagaaactaatatgaagctttctggtgatacttgttggagttctcactttgcaactttggtgactttgataa- |
101 |
Q |
| |
|
||||||| || |||||||||| ||| ||||| |||||| ||| || | |||||| ||||||||||| | ||||| |||||||||||| ||||||| |
|
|
| T |
12158338 |
aaattgttagtggaagaggtttgaacagagaaattaatatcaagtgttatagtgatatttgttggagttttgactttacaactttggtgaatttgatatc |
12158437 |
T |
|
| Q |
102 |
-----atagttatgttacta-tgttcttgaaatgttaaaagatcatgtattggtcaa--atagaagaggtcaagcaaatagtcttttaattctaatgaat |
193 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||| |||||| || | || || || ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
12158438 |
gatgtatagttttgtaactaatgttcttgaaatgttgaaagatgataaaccagttaatgatggaagaggagaagcaaacgatcttttaattctaatgaat |
12158537 |
T |
|
| Q |
194 |
acttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagacatcgtca |
293 |
Q |
| |
|
| ||||||||| |||| || ||| |||||||||||||| ||||| ||||| | |||| ||||||||||| | ||| |||| |||||| |||||||||||| |
|
|
| T |
12158538 |
aattttgatttcgcacccacattgcatttgatgaaaaaggtcttaggtatgttaaatgaattgtcacaagctttgcaaagaaaagatcaagacatcgtca |
12158637 |
T |
|
| Q |
294 |
atgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggatgagaa |
358 |
Q |
| |
|
||| |||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
12158638 |
atgctatgaacttgattaacatcacaaatgagcaattacaaactctaagagatgatgaatgagaa |
12158702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 55 - 321
Target Start/End: Complemental strand, 30867040 - 30866765
Alignment:
| Q |
55 |
tgatacttgttggagttctcactttgcaactttggtgactttgataa------atagttatgttact-atgttcttgaaatgttaaaagatcatgtattg |
147 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||| ||||||| |||||| ||| | | |||||||| | ||||| |||||| |||| || |
|
|
| T |
30867040 |
tgatactcgttggagttctcactttggaactttagtgaatttgatattgatgtatagttctgtaattgatgttcttaatatgttgaaagatgatgtttta |
30866941 |
T |
|
| Q |
148 |
gtcaaata--gaagaggtcaagcaaatagtcttttaattctaatgaatacttttgattttgcactcatattacatttgatgaaaaaagtctttggtattt |
245 |
Q |
| |
|
|| ||||| |||||||| |||||||| |||||||| || ||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
30866940 |
gttaaatatggaagaggtgaagcaaatggtcttttacttttaatgaataattttgattttgcaatcacattacatttgatgaaaaaagtcttgggtattt |
30866841 |
T |
|
| Q |
246 |
caaataaattgtcacaatcattggaaaggaaagattaagacatcgtcaatgttatgaacttggttaacatcacaaa |
321 |
Q |
| |
|
||||| | |||| |||||||||| | || |||||| ||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
30866840 |
caaattatttgtgacaatcattgtagagaaaagatcaagacattgtcaatgctatgaacttggttaacattacaaa |
30866765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 188 - 353
Target Start/End: Complemental strand, 251170 - 251005
Alignment:
| Q |
188 |
atgaatacttttgattttgcactcatattacatttgatgaaaaaagtctttggtatttcaaataaattgtcacaatcattggaaaggaaagattaagaca |
287 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||||||||||| ||||| ||||||| ||| ||||||||||| ||||| ||||||||||| |||| | |
|
|
| T |
251170 |
atgaataattttgattttgcactcacattgcatttgatgaaaaaggtcttaagtatttcgaatgaattgtcacaagcattgcaaaggaaagatcaagata |
251071 |
T |
|
| Q |
288 |
tcgtcaatgttatgaacttggttaacatcacaaagaagcaattacaaactcaaagagatgatggat |
353 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| ||| ||||||| ||| |||||||||||||| |
|
|
| T |
251070 |
tcatcaatgttatgaacctggttaacatcacaaaggagcgattacaagctctaagagatgatggat |
251005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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