View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_high_8 (Length: 366)
Name: NF6450_high_8
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 38212184 - 38211852
Alignment:
| Q |
16 |
aagggttcatgggccaaatggaccttttggggccgctaggtattacgtaggcctttgataacctgatattatttgtgcatgttcgaaggcaaggagcaac |
115 |
Q |
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| T |
38212184 |
aagggttcatgggccaaatggaccttttgaggccgctaggtattacgtaggcctttgataacc--atattagttgtgcatgttcgaagg-----agcaat |
38212092 |
T |
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| Q |
116 |
gcaattgaaaaattacttcaaccaccgtaattttgtgaagcgacaaagtgtaacatttgttgaagttatgataacttactatgattttatccaactcatg |
215 |
Q |
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| T |
38212091 |
gcaattgaaaaattacttcaaccaccgtaattttgtgaagctacaaagtgtaacatttgttaaaattatgataacttactatgattttatccatctcacg |
38211992 |
T |
|
| Q |
216 |
gttcactcaaatataaatatggacgaagacggtcttcttcaaccagggatacgtgacatgatgatagtcaagataccccttgtcagtctggttagatgct |
315 |
Q |
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| T |
38211991 |
gttcactcaaatataaatatggacgaagacggtctttttcaaccagggatacgtgacatgatgatagtcaaaataccccttgtcagtctggttagatgct |
38211892 |
T |
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| Q |
316 |
tgtcattttcaggcttgttctccaaatattgtttgatttt |
355 |
Q |
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| T |
38211891 |
agtcattttcaggcttgttctccaaatattgtttgatttt |
38211852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 13342461 - 13342493
Alignment:
| Q |
135 |
aaccaccgtaattttgtgaagcgacaaagtgta |
167 |
Q |
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| T |
13342461 |
aaccaccgtaattttgtgaagctacaaagtgta |
13342493 |
T |
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