View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_low_1 (Length: 827)
Name: NF6450_low_1
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_1 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 43924187 - 43923744
Alignment:
| Q |
18 |
ctttctgtgttgaaaccgccatgtgtcggtgtcggataccataccacacacctttgatcagagatgcgttgatcctaaggtagttcggatcatttataaa |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43924187 |
ctttctttgttgaaaccgccatgtgtcggtgtcggataccataccacacacctttgatcagagatgcgttgatcctaaggtggttcggatcatttataaa |
43924088 |
T |
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| Q |
118 |
ttccaactaaacataattatcttcattaattgnnnnnnnctctcttaattattaggaatcagagtggcttagggttactttacataaatggttggatgat |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43924087 |
ttccaactaaacataattatcttcattaattgtttttttctctcataattattaggaatcagagtggcttagggttactttacataaatggttggatgat |
43923988 |
T |
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| Q |
218 |
gaatactgtcctgaggaaacaaatgtggagataagcagagttgctgcaaaatcctactacaattctttgatacggaaacaagctgatttagctgacattt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43923987 |
gaatactgtcctgaggaaacaaatgtggagataagcagagttgctgcaaaatcctactataattctttgatacggaaacaagctgatttagctgacattt |
43923888 |
T |
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| Q |
318 |
tgttgaatatggcacgtgaattggaaaccatttcttataaggaaagttttcatggggcatacacatctgcaaatgcggctgtaaacctaattgcgcagcg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43923887 |
tgttgaatatggcacgtgaattggaaaccatttcttataaggaaagttttcatggggcatacacatctgcaaatgcggctgtaaacctaattgcgcagcg |
43923788 |
T |
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| Q |
418 |
gattgaacaattatgccacccaaattaaattccatagctccaca |
461 |
Q |
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| T |
43923787 |
gattgaacaattatgccacccaaattaaattccatagctccaca |
43923744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 588 - 827
Target Start/End: Complemental strand, 43533149 - 43532910
Alignment:
| Q |
588 |
gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
687 |
Q |
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| T |
43533149 |
gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa |
43533050 |
T |
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| Q |
688 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacacaaaaaca |
787 |
Q |
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| T |
43533049 |
atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacaaaaaaaca |
43532950 |
T |
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| Q |
788 |
attgtatgttacacaactttgtaaaatattagttggaagc |
827 |
Q |
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| T |
43532949 |
attgtatgttacacaaatttgtaaaatattagttggaagc |
43532910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 592 - 714
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
| Q |
592 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaaat |
689 |
Q |
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|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
43528863 |
gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat |
43528764 |
T |
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| Q |
690 |
gctaaccaattttctgcatagagat |
714 |
Q |
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| T |
43528763 |
gccaaccaattttctgcatagagat |
43528739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 713 - 820
Target Start/End: Complemental strand, 43528705 - 43528599
Alignment:
| Q |
713 |
attacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacacaaaaacaattgtatgttacacaactttgtaaa |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||| ||||||||| ||||||| |
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| T |
43528705 |
attacagtcttatttattgcacgtcccattgctttgagaacaatatcatcagctcctttttcctaca-aaaaacaaatgtaagttacacaaaattgtaaa |
43528607 |
T |
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| Q |
813 |
atattagt |
820 |
Q |
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|||||||| |
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| T |
43528606 |
atattagt |
43528599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 468 - 588
Target Start/End: Complemental strand, 43533332 - 43533211
Alignment:
| Q |
468 |
gctcgttcacttataaagtaattgtgatcatcggaacatgacgagtactccaaactgagcaagtaaaacacaacggnnnnnnnncaatcacactcatgca |
567 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43533332 |
gctctttctcttataaagtaattgtgatcatccaaacatgacgggtactccaaactgagcaagtaaaacacaacggaaaaaaaacaatcacactcatgca |
43533233 |
T |
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| Q |
568 |
tatacataaatt-atttgacag |
588 |
Q |
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| T |
43533232 |
tatacataaattaatttgacag |
43533211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 43537391 - 43537320
Alignment:
| Q |
713 |
attacagtcttatttattgcacgtcccattgctttgagaataatatcatcagcttctttttcctacacaaaa |
784 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||| ||||||| | |||||||||||| |||| |
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| T |
43537391 |
attacagtcttatttattgcacgtcccattgctttgacaacaatttcatcagatcctttttcctacagaaaa |
43537320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 482 - 588
Target Start/End: Complemental strand, 43529033 - 43528929
Alignment:
| Q |
482 |
aaagtaattgtgatcatcggaacatgacgagta--ctccaaactgag--caagtaaaacacaacggnnnnnnnncaatcacactcatgcatatacataaa |
577 |
Q |
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| T |
43529033 |
aaagtaattgtaatcatcgaaacatgacgagtagtctccaaactgagcacaagtaaaacacaacg------aaaaaatcatactcatgcatatacataaa |
43528940 |
T |
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| Q |
578 |
ttatttgacag |
588 |
Q |
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||||||||||| |
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| T |
43528939 |
ttatttgacag |
43528929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 592 - 661
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
| Q |
592 |
gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag |
661 |
Q |
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| T |
43537549 |
gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag |
43537478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 43537715 - 43537658
Alignment:
| Q |
485 |
gtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaagtaaaacacaa |
540 |
Q |
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|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
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| T |
43537715 |
gtaattgtgatcattgaaacatgacgagtagtctccaaactgagcaagtaaaacacaa |
43537658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 716 - 750
Target Start/End: Complemental strand, 43522939 - 43522905
Alignment:
| Q |
716 |
acagtcttatttattgcacgtcccattgctttgag |
750 |
Q |
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| T |
43522939 |
acagtcttatttatcgcacgtcccattgctttgag |
43522905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 651
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
| Q |
592 |
gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa |
651 |
Q |
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||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||| |
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| T |
43523107 |
gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa |
43523046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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