View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_low_13 (Length: 321)
Name: NF6450_low_13
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 35183900 - 35183592
Alignment:
| Q |
1 |
cttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35183900 |
cttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctg |
35183801 |
T |
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| Q |
101 |
aatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttgt |
200 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35183800 |
aatatcatacagaattgaaacagactgttttccctattttttatgatgccgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttgt |
35183701 |
T |
|
| Q |
201 |
tctactccagaataaattcaaacatgacccaaataaggttattggatgggtgggagctatggaaagtttggctaaattagtcggttgggatgttaggaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35183700 |
tctactccagaataaattcaaacatgacccaaataaggttatgagatgggtgggagctatggaaagtttggctaaattagtcggttgggatgttaggaac |
35183601 |
T |
|
| Q |
301 |
aagtaagtg |
309 |
Q |
| |
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||||||||| |
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| T |
35183600 |
aagtaagtg |
35183592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35105951 - 35105782
Alignment:
| Q |
1 |
cttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctg |
100 |
Q |
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||||| ||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| |||||| |
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| T |
35105951 |
cttcttcaagcaattcaaaattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttggaagagatggctactgttgctg |
35105852 |
T |
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| Q |
101 |
aatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgtacgaaa |
170 |
Q |
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| T |
35105851 |
aatgccgtaaaagattgaaacaaactgttttccctgttttttatgatgttgatccatctcatgttcgaaa |
35105782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 35055038 - 35054730
Alignment:
| Q |
1 |
cttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctg |
100 |
Q |
| |
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|||||||||||||||| || ||| || |||| |||||||||||||||||||| ||||| || ||||| |||||||||||||||||||| | ||||||| |
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| T |
35055038 |
cttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatcaacttggtgtttggaagagatggctgcaattgctg |
35054939 |
T |
|
| Q |
101 |
aatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttgt |
200 |
Q |
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| T |
35054938 |
attgttgtgagtatttcaaacaaacagttttccctattttttatgatgttgatccatctgatgtacgaaagcagagtggggtatatcagaatgattttgt |
35054839 |
T |
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| Q |
201 |
tctactccagaataaattcaaacatgacccaaataaggttattggatgggtgggagctatggaaagtttggctaaattagtcggttgggatgttaggaac |
300 |
Q |
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| ||| | | || ||||||| || ||| ||| |||||||| | ||||| | ||| |||| || |||||| ||||||| || |||||||| |||||| |
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| T |
35054838 |
tttacacaaaaagaaattcacacgtgatccagataaggttgtgagatggacgaaagcaatgggcaggttggctgaattagtaggctgggatgtcaggaac |
35054739 |
T |
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| Q |
301 |
aagtaagtg |
309 |
Q |
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||||||||| |
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| T |
35054738 |
aagtaagtg |
35054730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 35177902 - 35177702
Alignment:
| Q |
1 |
cttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctg |
100 |
Q |
| |
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|||| |||||||||| || ||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| ||||| ||||||| || |
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| T |
35177902 |
cttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctactattgttg |
35177803 |
T |
|
| Q |
101 |
aatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttgt |
200 |
Q |
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|||||| || | || ||| |||||||||||| ||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
35177802 |
aatgtcgtagcaatttcttacaaactgttttccctgttttttatgatatcaatccatctcatgtacgaaaacagaacggtgtgtaccagaatgcctttgt |
35177703 |
T |
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| Q |
201 |
t |
201 |
Q |
| |
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| |
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| T |
35177702 |
t |
35177702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 35169606 - 35169411
Alignment:
| Q |
6 |
acaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctgaatgt |
105 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||| || |||| |||| | |
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| T |
35169606 |
acaagcaattacaaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaaaga |
35169507 |
T |
|
| Q |
106 |
catatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgtacgaaaacagagcggggtgtaccagaatgcctttgtt |
201 |
Q |
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| T |
35169506 |
tgtaacgatttgcaacgaatagttttccctgttttttatgatattgatccatctcatgtacgaaaagagaatggtgtgtaccagaatgcctttgtt |
35169411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 25484419 - 25484582
Alignment:
| Q |
1 |
cttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagagatggccactattgctg |
100 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||| ||||| ||| ||||||| ||||||||||||||||| || ||||| ||||| | |
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| T |
25484419 |
cttctacaagcaattcaacagtcacgcatttctatcgttgttttctccaaagattatgcttcttcaacatggtgtttggatgaaatggctgctattagcg |
25484518 |
T |
|
| Q |
101 |
aatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatgt |
164 |
Q |
| |
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||| | ||| | |||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
25484519 |
aatctagaataaatttgaaacaagttgttttccctgttttttatgatgttgatccatctcatgt |
25484582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 25436357 - 25436248
Alignment:
| Q |
64 |
tcaacatggtgtttggaagagatggccactattgctgaatgtcatatagaattgaaacagactgttttccctattttttatgatgttgatccatctcatg |
163 |
Q |
| |
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||||||||||||||||| || ||||| |||||| ||||| | | | |||||||||| ||| |||||| ||||||||||||| ||||||||||||| |
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| T |
25436357 |
tcaacatggtgtttggatgaaatggctgctattgatgaatctagaaaaaaattgaaacaagttgtattccctgttttttatgatgtcgatccatctcatg |
25436258 |
T |
|
| Q |
164 |
tacgaaaaca |
173 |
Q |
| |
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| |||||||| |
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| T |
25436257 |
ttcgaaaaca |
25436248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 16466182 - 16466136
Alignment:
| Q |
38 |
ttgtcttctctaaaaattatgcggagtcaacatggtgtttggaagag |
84 |
Q |
| |
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|||| ||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
16466182 |
ttgttttctctaaaaactatgcggtgtcaaaatggtgtttggaagag |
16466136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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