View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6450_low_18 (Length: 243)
Name: NF6450_low_18
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8294495 - 8294720
Alignment:
| Q |
1 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8294495 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaatt |
8294594 |
T |
|
| Q |
101 |
gtacttgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8294595 |
gtacttgccctccaactcttccgtcccaggtaatagaatatcacgtttgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttat |
8294694 |
T |
|
| Q |
201 |
ttagtcggtcttttgagtgatttttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
8294695 |
ttagtcggtcttttgagtgatttttg |
8294720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30153686 - 30153900
Alignment:
| Q |
1 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaatt |
100 |
Q |
| |
|
|||| ||||||||||| |||||| ||| ||||| |||||||| ||| ||||||||| |||||||| | |||||||||||||| |||||||||||| | |
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| T |
30153686 |
aaggctggttgattgtgggtgacttttccgaaaagggttttgcgaaatttttcttctcaaatccagtaaatgatgttagaatcacgataccatcaaagct |
30153785 |
T |
|
| Q |
101 |
gtacttgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttat |
200 |
Q |
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| T |
30153786 |
gcacttgccctc------ttccgcccaatgtggtggaatgttacatgtgaccaaaatggtggcctcttccaaaccaaattgtgacggttctgattgttat |
30153879 |
T |
|
| Q |
201 |
ttagtcggtcttttgagtgat |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
30153880 |
ttagtcggtcttttgagtgat |
30153900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30148965 - 30149172
Alignment:
| Q |
1 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaatt |
100 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||| | |
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| T |
30148965 |
aaggctggttgattgtgggtgacctttctgaaaagggttttgcaaaaattttcttctcaaatccaatgaatgatgttagaatcacgataccatcaaagct |
30149064 |
T |
|
| Q |
101 |
gtacttgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttat |
200 |
Q |
| |
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| ||||||| | |||||| || | || || ||| | || ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30149065 |
gcacttgcc------cccttccgcccaatgtgatggaaagttacatgtgagcaaaatggtggcctcttccaaaccaaattttgatggttctgattgttat |
30149158 |
T |
|
| Q |
201 |
ttagtcggtctttt |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
30149159 |
ttagtcggtctttt |
30149172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 25733551 - 25733344
Alignment:
| Q |
6 |
tggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaattgtact |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||| |||||||||||| ||||||| |
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|
| T |
25733551 |
tggttgattgtgagtgactattctgaaaaaggttttgcaaaagttttctttttgaatcccgtgagtgatgttagaatcacgataccatcaaagttgtact |
25733452 |
T |
|
| Q |
106 |
tgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttatttagt |
205 |
Q |
| |
|
|| |||| | || ||| | ||||||||| ||||| ||| || ||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25733451 |
tgtcctcaa---------tcattggtcaaagaatatcatatgtgagtaaaatgacggcttcttccaaaccaaattgtgatggttctgattgctatttagc |
25733361 |
T |
|
| Q |
206 |
cggtcttttgagtgatt |
222 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
25733360 |
tggccttttgagtgatt |
25733344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 25741252 - 25741045
Alignment:
| Q |
6 |
tggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaattgtact |
105 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||| ||| |
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| T |
25741252 |
tggttgattgtgagtgacaattctgaaaaaggttttgcaaaaattttctttttgaatccagtgactgatgttagaatcactataccatcaaagttgcact |
25741153 |
T |
|
| Q |
106 |
tgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttatttagt |
205 |
Q |
| |
|
||||||| | || ||| | || |||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25741152 |
tgccctcaa---------tcgttggtcaaagtatatcatatgtgacaaaactgacggcctcttccaaaccaaattgtgatggttctgattgctatttagc |
25741062 |
T |
|
| Q |
206 |
cggtcttttgagtgatt |
222 |
Q |
| |
|
|| ||||| ||||||| |
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| T |
25741061 |
tggccttttcagtgatt |
25741045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25763948 - 25763733
Alignment:
| Q |
1 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaatt |
100 |
Q |
| |
|
|||| ||||||||||| ||||| ||| || ||||||||||||||| ||||||| ||||||||||||| | |||||||||||| |||||||||||| || |
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|
| T |
25763948 |
aaggctggttgattgtgtgtgacaattttggaaaaggttttgcaaagtttttctttttgaatccagtgactaatgttagaatcacgataccatcaaagtt |
25763849 |
T |
|
| Q |
101 |
gtacttgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttat |
200 |
Q |
| |
|
| | || ||||| ||||| || | | || |||||| || |||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
25763848 |
gcaatttccctc------ttccgcccaatatgatggaatattacctgtgaaaaaaatggtggcctcttccaaaccaaactgtgatggttcggattgttat |
25763755 |
T |
|
| Q |
201 |
ttagtcggtcttttgagtgatt |
222 |
Q |
| |
|
|||||| ||||| ||| ||||| |
|
|
| T |
25763754 |
ttagtctgtcttctgactgatt |
25763733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 25747422 - 25747215
Alignment:
| Q |
6 |
tggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaattgtact |
105 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||| || ||||||| |
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|
| T |
25747422 |
tggttgattgtgagtgacaattctgaaaaaggttttgcaaaaattttctttttgaatccagtaactgatgttagaatcacgataccatcgaagttgtact |
25747323 |
T |
|
| Q |
106 |
tgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttatttagt |
205 |
Q |
| |
|
|||| || | || ||| | |||||||| ||||| ||| || ||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
25747322 |
tgccgtcaa---------tcattggtgaaggaatatcatatgtgagtaaaatgacggcctcttccaaaccaaattgtgatggatctgattgctatttagc |
25747232 |
T |
|
| Q |
206 |
cggtcttttgagtgatt |
222 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
25747231 |
tggccttttgagtgatt |
25747215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25755995 - 25755786
Alignment:
| Q |
1 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaatccagtgattgatgttagaatcatgataccatcaaaatt |
100 |
Q |
| |
|
|||| ||||||||||| |||| | ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
25755995 |
aaggttggttgattgtggttgacaactctgataaaggttttgcaaaatttttctttttgaatccagtgactgatgttagaatcacaataccatcaaagtt |
25755896 |
T |
|
| Q |
101 |
gtacttgccctccaactcttccgtcccaggtaatagaatatcacgtgtgaagaaattggtggcctcttccaaaccaaattgtgatggttctgattgttat |
200 |
Q |
| |
|
| |||||||||| | || ||| | ||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25755895 |
gcacttgccctcaa---------tcattggtcaaagaatat---atgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttat |
25755808 |
T |
|
| Q |
201 |
ttagtcggtcttttgagtgatt |
222 |
Q |
| |
|
||||| || ||||||||||||| |
|
|
| T |
25755807 |
ttagttggccttttgagtgatt |
25755786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40462546 - 40462485
Alignment:
| Q |
1 |
aaggatggttgattgtaagtgactattctgaaaaaggttttgcaaaaattttcttcttgaat |
62 |
Q |
| |
|
|||| |||||||| || |||||| |||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
40462546 |
aaggctggttgatcgtgggtgacttttctcaagaaggttttgcaaaaaatttcttcttgaat |
40462485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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