View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_low_3 (Length: 601)
Name: NF6450_low_3
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 15 - 562
Target Start/End: Complemental strand, 31215298 - 31214751
Alignment:
| Q |
15 |
ggcaacttcataacttcttttggtattgttccactcaacatgtttcctcctacatcaaaatcttcaagtttctgtagcaatccaatttcacttggaatat |
114 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31215298 |
ggcaacttcacaacttcttttggtattgttccactcaacatgtttcctcctacatcaaaatcttcaagtttctgtagcaatccaatttcacttggaatat |
31215199 |
T |
|
| Q |
115 |
ttcctgaaaattgattgttgctgatcttaacttgaagtaatgatttcaggtatccaagttcctttggaagctttcctgttaggtggtttgaagaaaggtg |
214 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31215198 |
ttccagaaaattgattgttgctgatcttaacttcaagtaatgatttcaggtatccaagttcctttggaagctttcctgttaagtggtttgaagaaaggtg |
31215099 |
T |
|
| Q |
215 |
gagcttgcctagctggtttgcctccaaaagtgttgatggtatgacaccagtgatattattgttggatatcatgaaggtattgagattagggcacttcccc |
314 |
Q |
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|||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
31215098 |
gagcctgactagctggtttgcctccgaaagtgttaatggtatgacaccagtgatattattgttggatatcatgaagttgcagagattagggcacttcccc |
31214999 |
T |
|
| Q |
315 |
cagtttggtgaaatgtgtccatgaagtttattgtcactcagttcaaggtattccaacttcggatatacaccaaaatcttgtgatatatctccttctattt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214998 |
cagtttggtgaaatgtgtccatgaagtttattgtcactcagttcaaggtattccaacttcggatatacaccaaaatcttgtgatatatctccttctattt |
31214899 |
T |
|
| Q |
415 |
gattatcctgaattctgattcttacaatgcttgtgcagtttttcaaactagttggtattggaccagtaaaatggttgcgaaaagcactgaagtattctag |
514 |
Q |
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| T |
31214898 |
gattatcctgaattctgattcttacaatgcttgtgcagtttttcaaactagttggtattggaccagtaaaatggttgcgaaaagcactgaagtgttctag |
31214799 |
T |
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| Q |
515 |
agatccaccagaacatatttgaggtggcaaatggccagtaaaatcatt |
562 |
Q |
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| T |
31214798 |
agatccaccagaacatatttgaggtggcaaatggccagtaaaatcatt |
31214751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 250 - 491
Target Start/End: Complemental strand, 31057844 - 31057603
Alignment:
| Q |
250 |
atggtatgacaccagtgatattattgttggatatcatgaaggtattgagattagggcacttcccccagtttggtgaaatgtgtccatgaagtttattgtc |
349 |
Q |
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||||||| ||||||| ||||||||||| ||||| || ||||| | |||||| | |||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31057844 |
atggtataacaccagaaatattattgttagatattataaaggtctgaagattaagagacttcccccagtttggtgaaatttgtccatgaaatttattgtc |
31057745 |
T |
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| Q |
350 |
actcagttcaaggtattccaacttcggatatacaccaaaatcttgtgatatatctccttctatttgattatcctgaattctgattcttacaatgcttgtg |
449 |
Q |
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|||||| || || |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| | |||||||| ||||||| | |
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| T |
31057744 |
actcagatctagatattgcaacttcggatatacaccaaaatcttgtgctatatcaccttctatttgattcacctccagcgtgattctttcaatgctagaa |
31057645 |
T |
|
| Q |
450 |
cagtttttcaaactagttggtattggaccagtaaaatggttg |
491 |
Q |
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||| |||||||||| |||||||||||||| || ||| ||||| |
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| T |
31057644 |
caggttttcaaacttgttggtattggaccggtgaaacggttg |
31057603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 250 - 510
Target Start/End: Complemental strand, 31102279 - 31102019
Alignment:
| Q |
250 |
atggtatgacaccagtgatattattgttggatatcatgaaggtattgagattagggcacttcccccagtttggtgaaatgtgtccatgaagtttattgtc |
349 |
Q |
| |
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||||||| |||||| |||||| |||| |||||||||||||| | |||| | | ||||||||||||||||||||||||| ||||||| |||||| || |
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| T |
31102279 |
atggtataccaccagaaatattagtgttagatatcatgaaggtttcaagatcaagagacttcccccagtttggtgaaatgtggccatgaaatttattatc |
31102180 |
T |
|
| Q |
350 |
actcagttcaaggtattccaacttcggatatacaccaaaatcttgtgatatatctccttctatttgattatcctgaattctgattcttacaatgcttgtg |
449 |
Q |
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|||||| |||| |||| ||| |||||||| ||||||||||||| || |||||||||||| ||||||||| ||| ||||||||||||| ||||||| | | |
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| T |
31102179 |
actcaggtcaacgtatcgcaaattcggatacacaccaaaatcttctgctatatctccttcgatttgattaccctcaattctgattctttcaatgctagag |
31102080 |
T |
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| Q |
450 |
cagtttttcaaactagttggtattggaccagtaaaatggttgcgaaaagcactgaagtatt |
510 |
Q |
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||| |||| ||||| ||||||| ||||||||| ||| | || |||| ||||| ||||||| |
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| T |
31102079 |
cagctttttaaacttgttggtactggaccagtgaaacgattatgaaatgcacttaagtatt |
31102019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 250 - 491
Target Start/End: Complemental strand, 31139656 - 31139415
Alignment:
| Q |
250 |
atggtatgacaccagtgatattattgttggatatcatgaaggtattgagattagggcacttcccccagtttggtgaaatgtgtccatgaagtttattgtc |
349 |
Q |
| |
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||||||| || |||| |||||||||||||||||| ||| |||| |||||| | | ||| ||||||||||||||||||||||||||||||||||| || |
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| T |
31139656 |
atggtataaccccagaaatattattgttggatatctggaaagtatcaagattaagactctttccccagtttggtgaaatgtgtccatgaagtttattatc |
31139557 |
T |
|
| Q |
350 |
actcagttcaaggtattccaacttcggatatacaccaaaatcttgtgatatatctccttctatttgattatcctgaattctgattcttacaatgcttgtg |
449 |
Q |
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||| | |||| |||| ||| || ||||| |||||||||||||||| |||||| |||||||||||||| ||| | ||||||||| ||||||| | |
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| T |
31139556 |
actgacatcaaagtatcgcaaatttggatacacaccaaaatcttgtgctatatcaccttctatttgattcacctccagcctgattctttcaatgctagaa |
31139457 |
T |
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| Q |
450 |
cagtttttcaaactagttggtattggaccagtaaaatggttg |
491 |
Q |
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| T |
31139456 |
cagtttttcaaacttgttggtataggaccggtgaaacggttg |
31139415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 250 - 490
Target Start/End: Complemental strand, 31183371 - 31183131
Alignment:
| Q |
250 |
atggtatgacaccagtgatattattgttggatatcatgaaggtattgagattagggcacttcccccagtttggtgaaatgtgtccatgaagtttattgtc |
349 |
Q |
| |
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||||||| |||||| |||||||||||||||||| |||| | | | |||| | ||||| ||||||||||||||||| |||||||||| |||||| || |
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| T |
31183371 |
atggtatagcaccagaaatattattgttggatatcttgaaattctcaatattaagacactttccccagtttggtgaaatttgtccatgaaatttattatc |
31183272 |
T |
|
| Q |
350 |
actcagttcaaggtattccaacttcggatatacaccaaaatcttgtgatatatctccttctatttgattatcctgaattctgattcttacaatgcttgtg |
449 |
Q |
| |
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||| |||| ||||| ||| || ||||| ||||||||| |||||| |||||| |||||||||||||| ||| ||||||||| ||| ||||| | |
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| T |
31183271 |
acttgcctcaaagtattgcaaatttggatacacaccaaaaacttgtgctatatcaccttctatttgatttgcctcaattctgatccttcggatgctagaa |
31183172 |
T |
|
| Q |
450 |
cagtttttcaaactagttggtattggaccagtaaaatggtt |
490 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
31183171 |
cagtttttcaaacttgttggtattggaccagtgaaacggtt |
31183131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Complemental strand, 31183103 - 31183059
Alignment:
| Q |
518 |
tccaccagaacatatttgaggtggcaaatggccagtaaaatcatt |
562 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
31183103 |
tccaccagaacatatttgagacggcaaatggccaacaaaatcatt |
31183059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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