View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6450_low_6 (Length: 475)
Name: NF6450_low_6
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_6 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 30963878 - 30963417
Alignment:
| Q |
15 |
aactatttcttctcaaggaagtgacaatccaacaaccgttgatcaagatcaaacgttaggtgactcatagaaactgcgcgcttaaagacaaatgagaatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30963878 |
aactatttcttctcaaggaagtgacaatccaacaaccgttgatcaagatcaaacgttaggtgactcatagaaactgcgcgcttaaagacaaatgagaatg |
30963779 |
T |
|
| Q |
115 |
tcattgtaatgctccgcaaccattccctcattcctaaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30963778 |
tcattgtaatgctccgcaaccattccctcattcctcaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattc |
30963679 |
T |
|
| Q |
215 |
tcttatcctttccaccaatacacaatctctctctttcacacttcaatccaaattatccatggctcaaggtattctatttcaaatctcgcttcttcttatc |
314 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
30963678 |
tcttatcctttctaccaatacccaatctctctctttcacacttcaatccaaattatacatggctcaaggtattcaatttcaaatctcgcttcttctaatc |
30963579 |
T |
|
| Q |
315 |
ttttaacctttatgcgttctgcttccgctcaagtttacatttttatgctgattggcttattgggtcattttc-ttttgactttgatttacagaaggagat |
413 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30963578 |
ttttaacctttatgcgttctgcttcagctcaagtttaaatttttatgctgattggcttattgggtcattttctttttgactttgatttacagaaggagat |
30963479 |
T |
|
| Q |
414 |
aatgggtctccaaaatcatcgccatatgaagaagcattggaagctttgtcatctttgattac |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30963478 |
aatgggtctccaaaatcatcgccatatgaagaagcattggaagccttgtcatctttgattac |
30963417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 30979690 - 30979229
Alignment:
| Q |
15 |
aactatttcttctcaaggaagtgacaatccaacaaccgttgatcaagatcaaacgttaggtgactcatagaaactgcgcgcttaaagacaaatgagaatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30979690 |
aactatttcttctcaaggaagtgacaatccaacaaccgttgatcaagatcaaacgttaggtgactcatagaaactgcgcgcttaaagacaaatgagaatg |
30979591 |
T |
|
| Q |
115 |
tcattgtaatgctccgcaaccattccctcattcctaaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30979590 |
tcattgtaatgctccgcaaccattccctcattcctcaaacaccactctttctatcttccaatccttcattctcaatcccctttcctcgctataacaattc |
30979491 |
T |
|
| Q |
215 |
tcttatcctttccaccaatacacaatctctctctttcacacttcaatccaaattatccatggctcaaggtattctatttcaaatctcgcttcttcttatc |
314 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
30979490 |
tcttatcctttctaccaatacccaatctctctctttcacacttcaatccaaattatacatggctcaaggtattcaatttcaaatctcgcttcttctaatc |
30979391 |
T |
|
| Q |
315 |
ttttaacctttatgcgttctgcttccgctcaagtttacatttttatgctgattggcttattgggtcattttc-ttttgactttgatttacagaaggagat |
413 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30979390 |
ttttaacctttatgcgttctgcttcagctcaagtttaaatttttatgctgattggcttattgggtcattttctttttgactttgatttacagaaggagat |
30979291 |
T |
|
| Q |
414 |
aatgggtctccaaaatcatcgccatatgaagaagcattggaagctttgtcatctttgattac |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30979290 |
aatgggtctccaaaatcatcgccatatgaagaagcattggaagccttgtcatctttgattac |
30979229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University