View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_low_7 (Length: 449)
Name: NF6450_low_7
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Original strand, 41658477 - 41658904
Alignment:
| Q |
13 |
ttgttgaagttacaacttaaatagttaaatttcatgatatacacaaagcaaatcatggataagtatatttcttacttgcatataggaggccaatatgcat |
112 |
Q |
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| T |
41658477 |
ttgttgaatttacaacttaaatagttaaatttcatgatatacacaaagcaaatcatggataagtatatttcttacttgcatacaggaggccaatatgcat |
41658576 |
T |
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| Q |
113 |
gaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggcatgaggactaaaactagtggccaacctcacaacatc |
212 |
Q |
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| T |
41658577 |
gaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcagcatgaggactaaaactagtggccaacctcacaacatc |
41658676 |
T |
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| Q |
213 |
aggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatgacattaatgggtatc |
312 |
Q |
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| T |
41658677 |
aggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaacttgtggacagaagctttcagatcatcgacggcattaatgggtatc |
41658776 |
T |
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| Q |
313 |
ccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgacgggta |
412 |
Q |
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| T |
41658777 |
ccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaatcaatgatgggta |
41658876 |
T |
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| Q |
413 |
ttgattgctccgagtcttggagaataat |
440 |
Q |
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| T |
41658877 |
ttgattgctccgagtcttggggaataat |
41658904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 13845711 - 13845779
Alignment:
| Q |
274 |
acagaagctttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccat |
342 |
Q |
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| T |
13845711 |
acagaagctttgagatcatcaagaacattaataggcatcccatgattcacaatttggaagaaaccccat |
13845779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 13845792 - 13845824
Alignment:
| Q |
385 |
tcccagtttgtgaaatcaatgacgggtattgat |
417 |
Q |
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| T |
13845792 |
tcccagtttgtgaaatcaatgatgggtattgat |
13845824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 78 - 419
Target Start/End: Original strand, 14629868 - 14630209
Alignment:
| Q |
78 |
tatttcttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggca |
177 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| |||||||| ||| |
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| T |
14629868 |
tattacttacttgcatacaacaggccaatatgcatgaattttctcttctgaagtatacacaagctgcaagtaatccttccactccaacactgactcagca |
14629967 |
T |
|
| Q |
178 |
tgaggactaaaactagtggccaacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacag |
277 |
Q |
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| T |
14629968 |
tgagggctaaaactagtggccaacctcacaacttcaggaggtgaattctctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacag |
14630067 |
T |
|
| Q |
278 |
aagctttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttg |
377 |
Q |
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| T |
14630068 |
aagctttcaaatcatcaaggacgttaatgggtataccatgattcacaatttggaagaaacccaaattagttgcagcactaaaaattgaatcttgaacatc |
14630167 |
T |
|
| Q |
378 |
tatgtcttcccagtttgtgaaatcaatgacgggtattgattg |
419 |
Q |
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| ||| |||||||||||||||||||||| |||||||||||| |
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| T |
14630168 |
tgggtcatcccagtttgtgaaatcaatgatgggtattgattg |
14630209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 83 - 419
Target Start/End: Original strand, 14644941 - 14645274
Alignment:
| Q |
83 |
cttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacacaagatgcaggtgatccttccactccaatactgactcggcatgagg |
182 |
Q |
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| T |
14644941 |
cttacttgcatacagcaggccaatatgcatgaattttctcttctgaagtatacacaagccgcaagtaatccttccactccaatactgactcagcaagagg |
14645040 |
T |
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| Q |
183 |
actaaaactagtggccaacctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagct |
282 |
Q |
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| T |
14645041 |
gctaaaactggtggacaacctcacaacttcaggtggtgaat---ctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagct |
14645137 |
T |
|
| Q |
283 |
ttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgt |
382 |
Q |
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|||| |||||| | ||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || | | || |
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| T |
14645138 |
ttcaaatcatcaaggacgttaatgggtataccatgattcacaatttggaagaaacccaacttagttgcagcactaaaaattgaatcttgaacatctgggt |
14645237 |
T |
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| Q |
383 |
cttcccagtttgtgaaatcaatgacgggtattgattg |
419 |
Q |
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| T |
14645238 |
catcccagtttgtgaaatcaatgatgggtattgattg |
14645274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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