View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6450_low_8 (Length: 424)
Name: NF6450_low_8
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 30943114 - 30942712
Alignment:
| Q |
19 |
caacctgccagataaaatttgaaaaatggtgtagatttgtattaaatcactaaaccttccggtccggtccggtttgtagatttcataactccaatgataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
30943114 |
caacctgccagataaaatttgaaaaatggtgtagatttgtattaaatcactaaaccggccagtccgatccggtttgtagatttcataactacaatgataa |
30943015 |
T |
|
| Q |
119 |
aatcctttaagaactcaccaggaagataaaacggttggtccaagtttgactccttttgaagcaaaaaatttaaatctattgaaggttagcaaatttggtt |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30943014 |
aatccttgaagaactcaccaggaagataaaacggttggtccaagtttgactccttttgaagcaaaaaatttaaatctattgaaggttagcaaatttggtt |
30942915 |
T |
|
| Q |
219 |
ggagtggaatcccttgttccatttgtaaactgaactgaaaatagaatataagttatacatataagtaaataagtaatggttacaagtttgcatggatcaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30942914 |
ggagtggaatcccttgttccatttgtaaactgaactgaaaatagaatataagttatacatataagtaaataagtaatggttacaagtttgcatgtatcaa |
30942815 |
T |
|
| Q |
319 |
aaatcaatgaagataacttacgtgagtgaaactgtgatcatttacatcttcaaattgagttttttgattaatcactatcatattgtcctatgctactcca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | ||||| |
|
|
| T |
30942814 |
aaatcaatgaagataacttacgtgagtgaaactgtgatcatttacatcttcaaattgagttttttgattaatcactatcatgttgtcgtatggttctcca |
30942715 |
T |
|
| Q |
419 |
cta |
421 |
Q |
| |
|
||| |
|
|
| T |
30942714 |
cta |
30942712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University