View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6450_low_9 (Length: 399)
Name: NF6450_low_9
Description: NF6450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6450_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 35184133 - 35183883
Alignment:
| Q |
11 |
cacagagtcgtttgacatcttccgatttgatccatttgggtcagggagatataggttcttccagtgattccaatagcatccaaagctatagatatgatgt |
110 |
Q |
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| T |
35184133 |
cacagagtcgtttgacatcttccgatttgatccatttgggtcagggagatataggttcttccagtgattccaatagcatccaaagctatagatatgatgt |
35184034 |
T |
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| Q |
111 |
gtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctttcaaggatgacaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35184033 |
gtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatctaacaactaagggtattttcgctttcaaggatgacaaa |
35183934 |
T |
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| Q |
211 |
agacttgaaaaaggagaatccctttcgccgcaacttctacaagctattcaa |
261 |
Q |
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| T |
35183933 |
agacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaa |
35183883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 261
Target Start/End: Complemental strand, 35106104 - 35105934
Alignment:
| Q |
91 |
caaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattt |
190 |
Q |
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|||||||||||||| || ||||||||||||||| | ||| | ||||| |||||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
35106104 |
caaagctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtattt |
35106005 |
T |
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| Q |
191 |
tcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagctattcaa |
261 |
Q |
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| T |
35106004 |
ttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaattcaa |
35105934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 64 - 254
Target Start/End: Complemental strand, 35178082 - 35177892
Alignment:
| Q |
64 |
ggttcttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatcttt |
163 |
Q |
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|||||||||| |||||||| | | | || ||||||| ||| || ||||||||||||||| | ||| | ||||||||||||||||||||||||||||||| |
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| T |
35178082 |
ggttcttccattgattccagtggagtgcatagctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatcttt |
35177983 |
T |
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| Q |
164 |
atgctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagc |
254 |
Q |
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| T |
35177982 |
atgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagc |
35177892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 95 - 254
Target Start/End: Complemental strand, 35169760 - 35169601
Alignment:
| Q |
95 |
gctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgc |
194 |
Q |
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|||||| ||| |||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
35169760 |
gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc |
35169661 |
T |
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| Q |
195 |
tttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagc |
254 |
Q |
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||||||||||| ||||| || || |||||||||| | |||| |||||| || |||||| |
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| T |
35169660 |
cttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagc |
35169601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 259
Target Start/End: Complemental strand, 35055173 - 35055023
Alignment:
| Q |
109 |
gtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctttcaaggatgaca |
208 |
Q |
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||||| |||||||| | ||| ||||||| ||||| | |||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||| |
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| T |
35055173 |
gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgaca |
35055074 |
T |
|
| Q |
209 |
aaagacttgaaaaaggagaatccctttcgccgcaacttctacaagctattc |
259 |
Q |
| |
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|||| ||||| |||||||||| |||| ||||| ||||||||||| |||| |
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| T |
35055073 |
aaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattc |
35055023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 500444 - 500356
Alignment:
| Q |
85 |
agcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatct |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
500444 |
agcatccaaagctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatct |
500356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 261
Target Start/End: Original strand, 25484251 - 25484436
Alignment:
| Q |
76 |
gattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaa |
175 |
Q |
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||||| ||||||| ||||||||||||||| |||||||| ||||||||| | ||| |||||||||| || | |||||||| ||||| || |||||||| | |
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| T |
25484251 |
gattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctca |
25484350 |
T |
|
| Q |
176 |
caactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagctattcaa |
261 |
Q |
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| || ||||||||| | |||||||||||||| || | ||||||||| || |||| || |||||||||||||| |||||| |
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| T |
25484351 |
atagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaa |
25484436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 25636510 - 25636626
Alignment:
| Q |
94 |
agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcg |
193 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | ||| |||||||||||||||| |||||||| ||||| ||||||||||| || | || ||||||| |
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| T |
25636510 |
agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga |
25636609 |
T |
|
| Q |
194 |
ctttcaaggatgacaaa |
210 |
Q |
| |
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| ||||||||||||||| |
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| T |
25636610 |
ccttcaaggatgacaaa |
25636626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 25442322 - 25442434
Alignment:
| Q |
98 |
atagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgcttt |
197 |
Q |
| |
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||||||| |||||||| |||||||| | ||| ||||||||||||| | |||||||| ||||| || | |||||| || | || |||||||||| || |
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| T |
25442322 |
atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt |
25442421 |
T |
|
| Q |
198 |
caaggatgacaaa |
210 |
Q |
| |
|
||||||||||||| |
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|
| T |
25442422 |
caaggatgacaaa |
25442434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 25479049 - 25478939
Alignment:
| Q |
97 |
tatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctt |
196 |
Q |
| |
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|||||||| || ||||||||||||||| | ||| ||||||||| || || |||| ||| ||||| ||||||||||| || | || ||||||||| | | |
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| T |
25479049 |
tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcacgt |
25478950 |
T |
|
| Q |
197 |
tcaaggatgac |
207 |
Q |
| |
|
||| ||||||| |
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| T |
25478949 |
tcatggatgac |
25478939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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