View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6451_high_1 (Length: 404)

Name: NF6451_high_1
Description: NF6451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6451_high_1
NF6451_high_1
[»] chr1 (2 HSPs)
chr1 (15-404)||(21776428-21776817)
chr1 (15-404)||(19713583-19713972)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Original strand, 21776428 - 21776817
Alignment:
Q  15 acatgtttggtctatactcaagagaaatgaaatcagttttgggttatgaccaatccactctcactctcttaagcttctacaaagacttaggttcttgcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21776428 acatgtttggtctatactcaagagaaatgaaatcagttttgggttatgaccaatccactctcactctcttaagcttctacaaggacttaggttcttgcat 21776527  T
Q  115 aggaattctctcaggcctactcaatgaaatcacacctccttgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttggctt 214  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21776528 aggaattctctcaggtctactcaatgaaatcacacctccatgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttggctt 21776627  T
Q  215 gcagtcacaagaaaaaactcgaaaccgcaaatatggaatatgtgcttatacacattcattggagcaacttcgcattgttcaaccaacactggcgttgtag 314  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  21776628 gcagtcacaagaaaaatctcgaaaccgcaaatatggaatatgtgcttatacacattcattggagccaattcgcattgttcaaccaacactggagttgtag 21776727  T
Q  315 tcaccagtgtaaggaatttccctggcagcagcggcattgtcataggtcttttgagtggttatcttggtttgagcgcagctatcatcactc 404  Q
    ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  21776728 tcaccagtgtaaggaatttccctggtagtagaggtattgtcataggtcttttgagtggttatcttggtttgagtggagctatcattactc 21776817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 19713972 - 19713583
Alignment:
Q  15 acatgtttggtctatactcaagagaaatgaaatcagttttgggttatgaccaatccactctcactctcttaagcttctacaaagacttaggttcttgcat 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||  |||    
T  19713972 acatgtttggtctatactcaagagaaatcaaatcagttttgggttatgaccaatccactctcactctcttaagcttcttcaaggacttgggatctaacat 19713873  T
Q  115 aggaattctctcaggcctactcaatgaaatcacacctccttgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttggctt 214  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19713872 aggcattctctcaggcctactcaatgaaatcacacctccttgggttgtcttaacaattggtggtcttctcaacttttttggctatttcatgatttggctt 19713773  T
Q  215 gcagtcacaagaaaaaactcgaaaccgcaaatatggaatatgtgcttatacacattcattggagcaacttcgcattgttcaaccaacactggcgttgtag 314  Q
    |||||||||||||||| | | ||||| | ||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||| | | |||    
T  19713772 gcagtcacaagaaaaatcccaaaacctccaatatggaatatgtgcttatacatatttattggagcaaattctcattgttcaaccaacactggagctttag 19713673  T
Q  315 tcaccagtgtaaggaatttccctggcagcagcggcattgtcataggtcttttgagtggttatcttggtttgagcgcagctatcatcactc 404  Q
    |||||||||||| |||||||||||| || || ||  |||||||||| |||||||||||||||||||||||||| | ||||||||| ||||    
T  19713672 tcaccagtgtaaagaatttccctggtagtagaggtgttgtcataggccttttgagtggttatcttggtttgagtggagctatcattactc 19713583  T

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