View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6451_low_3 (Length: 251)
Name: NF6451_low_3
Description: NF6451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6451_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21776815 - 21777041
Alignment:
| Q |
1 |
ctcaactatactatgccttttatggaaatgactcaaaatctttaattttgcttatggcttggttaccaactgttgtaacttttgtttttacgccggttat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21776815 |
ctcaactatactacgccttttatggaaatgactcaaaatctttaattttgcttatggcttggttaccaactgttgtaacttttgtttttacgccggttat |
21776914 |
T |
|
| Q |
101 |
taagcatcacaagagagttgaacaaccgaatgattccaaagctttctataattttctttacatgacactaatccttgcagggtacctcatgataatgatc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21776915 |
taagcatcacatgagagttgaacaaccgaatgattccaaagctttctataattttctttacatgactttaatccttgcagggtacctcatgataatgatc |
21777014 |
T |
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| Q |
201 |
atagtacaaaaatgtttcaactttact |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
21777015 |
atagtacaaaaatgtttcaactttact |
21777041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19713585 - 19713359
Alignment:
| Q |
1 |
ctcaactatactatgccttttatggaaatgactcaaaatctttaattttgcttatggcttggttaccaactgttgtaacttttgtttttacgccggttat |
100 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
19713585 |
ctcaactatactatgccttctatggaaatgactctaaatctttaattttgcttatggcttggttaccaactgctgtaacttttgtttttatgccagttat |
19713486 |
T |
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| Q |
101 |
taagcatcacaagagagttgaacaaccgaatgattccaaagctttctataattttctttacatgacactaatccttgcagggtacctcatgataatgatc |
200 |
Q |
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|||||| || ||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||||||| |
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| T |
19713485 |
taagcaccataagagagctgaacaaccaaatgattccaaagctttttataatttcctttacatgtctttaatccttgcagggttcctcatgataatgatc |
19713386 |
T |
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| Q |
201 |
atagtacaaaaatgtttcaactttact |
227 |
Q |
| |
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||||| |||| |||||||||||||||| |
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| T |
19713385 |
atagtgcaaacatgtttcaactttact |
19713359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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