View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6452_high_1 (Length: 452)

Name: NF6452_high_1
Description: NF6452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6452_high_1
NF6452_high_1
[»] chr7 (38 HSPs)
chr7 (1-370)||(35444184-35444557)
chr7 (362-436)||(35445668-35445742)
chr7 (1-57)||(20243256-20243312)
chr7 (10-59)||(41250061-41250109)
chr7 (3-55)||(5483333-5483385)
chr7 (13-57)||(19793805-19793849)
chr7 (24-60)||(29488404-29488440)
chr7 (24-60)||(33232738-33232774)
chr7 (24-60)||(34284880-34284916)
chr7 (1-57)||(44558779-44558834)
chr7 (10-57)||(5458085-5458131)
chr7 (10-57)||(34722034-34722081)
chr7 (13-56)||(37307891-37307933)
chr7 (13-52)||(44473326-44473365)
chr7 (22-57)||(45200194-45200229)
chr7 (3-57)||(1285076-1285129)
chr7 (9-55)||(4406725-4406771)
chr7 (3-57)||(7670435-7670488)
chr7 (3-45)||(8290476-8290518)
chr7 (3-57)||(10244728-10244781)
chr7 (11-57)||(13955481-13955526)
chr7 (3-57)||(19416515-19416568)
chr7 (3-57)||(19599146-19599199)
chr7 (1-51)||(21134444-21134494)
chr7 (3-57)||(23198756-23198809)
chr7 (11-57)||(38728209-38728255)
chr7 (3-57)||(43539111-43539164)
chr7 (11-52)||(9522918-9522958)
chr7 (10-47)||(36343549-36343586)
chr7 (3-48)||(37624553-37624597)
chr7 (3-52)||(39280825-39280873)
chr7 (13-57)||(3672569-3672612)
chr7 (11-59)||(5508345-5508393)
chr7 (24-60)||(19036443-19036479)
chr7 (25-65)||(20115610-20115650)
chr7 (24-60)||(20718157-20718193)
chr7 (3-51)||(27462443-27462490)
chr7 (3-63)||(39043750-39043809)
[»] chr8 (24 HSPs)
chr8 (1-69)||(37750004-37750071)
chr8 (10-60)||(29652216-29652265)
chr8 (3-57)||(39433411-39433464)
chr8 (7-52)||(9663064-9663109)
chr8 (3-52)||(24195255-24195303)
chr8 (11-60)||(26991772-26991820)
chr8 (24-60)||(20665704-20665740)
chr8 (9-53)||(44068005-44068049)
chr8 (22-61)||(13284290-13284329)
chr8 (10-57)||(27718908-27718954)
chr8 (18-57)||(35372119-35372158)
chr8 (3-57)||(2554219-2554272)
chr8 (11-57)||(8717490-8717535)
chr8 (3-57)||(26885645-26885698)
chr8 (6-52)||(44087244-44087290)
chr8 (3-40)||(34645092-34645129)
chr8 (10-55)||(40919373-40919417)
chr8 (24-57)||(44215816-44215849)
chr8 (24-60)||(19245361-19245397)
chr8 (3-55)||(19260586-19260637)
chr8 (24-60)||(19318545-19318581)
chr8 (24-60)||(30551067-30551103)
chr8 (3-55)||(39525381-39525433)
chr8 (4-52)||(40048764-40048812)
[»] chr2 (33 HSPs)
chr2 (3-57)||(19976154-19976208)
chr2 (3-60)||(19595485-19595542)
chr2 (3-57)||(25186249-25186302)
chr2 (11-60)||(16221361-16221409)
chr2 (10-57)||(29734692-29734738)
chr2 (12-57)||(37119274-37119318)
chr2 (24-60)||(3708377-3708413)
chr2 (5-57)||(7052774-7052826)
chr2 (24-60)||(11869003-11869039)
chr2 (24-60)||(35360396-35360432)
chr2 (1-60)||(17280953-17281011)
chr2 (22-57)||(19967419-19967454)
chr2 (10-57)||(23718936-23718982)
chr2 (10-57)||(24106608-24106654)
chr2 (10-57)||(33063987-33064033)
chr2 (10-57)||(39761439-39761485)
chr2 (3-57)||(12124546-12124599)
chr2 (13-55)||(29133501-29133542)
chr2 (6-60)||(30956427-30956480)
chr2 (3-57)||(41859853-41859906)
chr2 (3-60)||(18782547-18782603)
chr2 (11-48)||(19159951-19159987)
chr2 (3-52)||(36474768-36474816)
chr2 (2-50)||(833075-833122)
chr2 (1-58)||(13143104-13143164)
chr2 (1-57)||(16204822-16204877)
chr2 (3-63)||(30978357-30978416)
chr2 (10-58)||(32901381-32901428)
chr2 (13-57)||(34464426-34464469)
chr2 (10-58)||(35685075-35685122)
chr2 (1-57)||(39068713-39068768)
chr2 (5-57)||(40853827-40853878)
chr2 (1-57)||(42066713-42066768)
[»] chr1 (28 HSPs)
chr1 (11-57)||(3393583-3393628)
chr1 (3-57)||(24752654-24752708)
chr1 (10-57)||(39452461-39452508)
chr1 (10-52)||(15549250-15549292)
chr1 (3-57)||(34521197-34521250)
chr1 (3-57)||(44641528-44641581)
chr1 (10-64)||(45701322-45701375)
chr1 (4-57)||(925434-925487)
chr1 (1-57)||(7158774-7158829)
chr1 (3-57)||(12213994-12214047)
chr1 (3-57)||(14907042-14907096)
chr1 (11-57)||(17917153-17917198)
chr1 (3-57)||(21965898-21965952)
chr1 (11-65)||(23203315-23203368)
chr1 (3-57)||(26755617-26755670)
chr1 (3-57)||(29233981-29234034)
chr1 (11-57)||(29450996-29451042)
chr1 (10-52)||(40021376-40021418)
chr1 (3-57)||(42888576-42888629)
chr1 (3-57)||(48646732-48646786)
chr1 (11-57)||(48681948-48681993)
chr1 (15-53)||(50727299-50727337)
chr1 (3-60)||(13778819-13778876)
chr1 (10-59)||(30561722-30561770)
chr1 (3-48)||(45774584-45774629)
chr1 (1-57)||(20006071-20006127)
chr1 (3-47)||(28053247-28053291)
chr1 (3-55)||(39879232-39879284)
[»] chr6 (20 HSPs)
chr6 (10-57)||(34828307-34828354)
chr6 (24-60)||(247343-247379)
chr6 (24-60)||(33975927-33975963)
chr6 (10-57)||(13496117-13496163)
chr6 (17-52)||(14036299-14036334)
chr6 (22-57)||(24623342-24623377)
chr6 (3-53)||(8138465-8138514)
chr6 (3-57)||(9111048-9111101)
chr6 (11-57)||(12904332-12904377)
chr6 (11-57)||(14350950-14350995)
chr6 (3-57)||(20744139-20744192)
chr6 (11-57)||(32193874-32193919)
chr6 (11-57)||(33938694-33938739)
chr6 (3-52)||(33824887-33824935)
chr6 (3-55)||(6018666-6018718)
chr6 (24-60)||(12582570-12582606)
chr6 (1-57)||(12700426-12700481)
chr6 (3-55)||(16204797-16204848)
chr6 (4-64)||(20720789-20720848)
chr6 (24-60)||(34319071-34319107)
[»] chr3 (28 HSPs)
chr3 (11-58)||(51505873-51505919)
chr3 (11-57)||(47313386-47313432)
chr3 (3-52)||(38894043-38894091)
chr3 (3-52)||(52575953-52576001)
chr3 (24-60)||(916201-916237)
chr3 (17-57)||(5030206-5030246)
chr3 (1-57)||(21506763-21506818)
chr3 (9-52)||(40862177-40862220)
chr3 (10-57)||(43345021-43345067)
chr3 (10-57)||(43490431-43490477)
chr3 (3-50)||(44582732-44582779)
chr3 (6-52)||(4216409-4216454)
chr3 (11-57)||(20370296-20370341)
chr3 (3-57)||(25340931-25340984)
chr3 (3-57)||(25874131-25874185)
chr3 (3-57)||(28244111-28244164)
chr3 (3-57)||(32629081-32629134)
chr3 (3-57)||(33745100-33745153)
chr3 (3-57)||(44579637-44579690)
chr3 (11-57)||(49088753-49088798)
chr3 (15-57)||(51379798-51379839)
chr3 (3-57)||(53996300-53996353)
chr3 (3-52)||(25441507-25441555)
chr3 (11-60)||(29631184-29631232)
chr3 (10-55)||(39100098-39100142)
chr3 (22-55)||(51402738-51402771)
chr3 (24-60)||(38911170-38911206)
chr3 (24-60)||(44075497-44075533)
[»] chr4 (33 HSPs)
chr4 (3-57)||(3936628-3936681)
chr4 (3-57)||(19479484-19479537)
chr4 (3-57)||(35287514-35287567)
chr4 (3-60)||(11949770-11949826)
chr4 (4-57)||(19935169-19935221)
chr4 (11-56)||(22040652-22040696)
chr4 (24-60)||(10262110-10262146)
chr4 (24-60)||(19587837-19587873)
chr4 (10-58)||(20403182-20403229)
chr4 (24-60)||(21562309-21562345)
chr4 (24-60)||(24080181-24080217)
chr4 (24-60)||(43329830-43329866)
chr4 (22-57)||(35998000-35998035)
chr4 (11-58)||(48251923-48251969)
chr4 (10-57)||(56361827-56361874)
chr4 (3-61)||(897422-897479)
chr4 (3-57)||(9946428-9946481)
chr4 (3-57)||(12698598-12698651)
chr4 (3-57)||(20383489-20383542)
chr4 (11-57)||(28435263-28435308)
chr4 (11-57)||(39171385-39171430)
chr4 (11-57)||(43374287-43374332)
chr4 (3-64)||(675912-675972)
chr4 (10-55)||(16304112-16304156)
chr4 (3-52)||(16431622-16431670)
chr4 (12-53)||(19347335-19347375)
chr4 (3-52)||(29099716-29099765)
chr4 (3-52)||(52620570-52620619)
chr4 (3-55)||(18138265-18138317)
chr4 (10-54)||(22578930-22578974)
chr4 (3-59)||(46676505-46676560)
chr4 (3-55)||(49125474-49125526)
chr4 (24-60)||(51449896-51449932)
[»] chr5 (24 HSPs)
chr5 (24-60)||(37461795-37461831)
chr5 (25-60)||(13351454-13351489)
chr5 (1-52)||(16166380-16166431)
chr5 (22-61)||(18147715-18147754)
chr5 (2-57)||(18589873-18589927)
chr5 (3-54)||(27479637-27479688)
chr5 (10-57)||(31561357-31561404)
chr5 (10-57)||(32283580-32283627)
chr5 (22-57)||(33584085-33584120)
chr5 (11-57)||(7713533-7713578)
chr5 (3-57)||(10704338-10704391)
chr5 (11-57)||(27903114-27903159)
chr5 (3-49)||(31708153-31708198)
chr5 (3-57)||(37932331-37932384)
chr5 (3-57)||(40715956-40716009)
chr5 (13-58)||(1488364-1488409)
chr5 (3-60)||(5150089-5150146)
chr5 (22-55)||(13409553-13409586)
chr5 (4-57)||(13796331-13796383)
chr5 (3-64)||(26655458-26655518)
chr5 (3-64)||(26927043-26927103)
chr5 (11-52)||(31602840-31602880)
chr5 (1-57)||(18489081-18489136)
chr5 (3-55)||(29382669-29382721)
[»] scaffold0743 (1 HSPs)
scaffold0743 (3-57)||(1425-1479)
[»] scaffold0735 (1 HSPs)
scaffold0735 (3-57)||(1529-1582)
[»] scaffold0154 (1 HSPs)
scaffold0154 (3-57)||(37536-37589)
[»] scaffold0122 (1 HSPs)
scaffold0122 (11-57)||(14201-14246)
[»] scaffold0031 (1 HSPs)
scaffold0031 (10-64)||(47255-47308)
[»] scaffold0009 (1 HSPs)
scaffold0009 (10-48)||(189604-189642)
[»] scaffold0007 (1 HSPs)
scaffold0007 (11-57)||(244480-244526)
[»] scaffold0259 (1 HSPs)
scaffold0259 (3-55)||(5416-5467)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 35444184 - 35444557
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaacttttacatgatat----atttttgttaaaaagtctg 96  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  35444184 caaaccctcgaccatgcatattattatgcattgttcatatcaacggagctaaactcatgaaaacttttacatgatatatatatttttgttaaaaagtctg 35444283  T
Q  97 gtgaccaaaaatttatttttaagtaaataaatagataatttaaaattcgaacccctactcttacataacgcaacgtccgtccaagtcatgctcacgtgaa 196  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  35444284 gtgaccaaaaatttatttttaagtaaataaatagataagctaaaattcgaacccctactcttgcataacgcgacgtccgtccgagtcatgctcacgtgaa 35444383  T
Q  197 cttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgcgaagtaaaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35444384 cttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataatgtgaagtaaaacgtgcagctaatccgatcatcatgtgaagtaaaa 35444483  T
Q  297 taaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgcattaccatgttattcaata 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  35444484 taaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgcattactatgttatttaata 35444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 35445668 - 35445742
Alignment:
Q  362 tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagt 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35445668 tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagt 35445742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20243312 - 20243256
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  20243312 caaaccccggaccttgcatattattatgcattgtccataccaactgagctaagctca 20243256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 41250061 - 41250109
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcatg 59  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  41250061 gaccttgcatat-attatacattgttcttatcaactgagctaaactcatg 41250109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5483385 - 5483333
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  |||| ||||||| |||||||||||||||||||    
T  5483385 aacccgcgaccttgcatatatttatacattgtttatatcaactgagctaaact 5483333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 19793849 - 19793805
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||    
T  19793849 cttgcatattatcatgcattgtccatatcaactgagttaaactca 19793805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 29488440 - 29488404
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29488440 ttatgcattgttcctatcaactgagctaaactcatga 29488404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 33232738 - 33232774
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33232738 ttatgcattgttcctatcaactgagctaaactcatga 33232774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 34284880 - 34284916
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34284880 ttatgcattgttcctatcaactgagctaaactcatga 34284916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44558779 - 44558834
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| | |||||||||||| |||||||||||| |||| |||||||||||||||||    
T  44558779 caaacctcagaccttgcatat-attatgcattgtccataccaactgagctaaactca 44558834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 5458085 - 5458131
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  5458085 gaccttgcatat-attatgcattgttcttatcaactgagctaagctca 5458131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 34722034 - 34722081
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||||||||||||| |||||||| ||| ||||    
T  34722034 gaccttacatattattatgcattgttcataccaactgagttaagctca 34722081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 37307891 - 37307933
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaaactc 56  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  37307891 cttgcatat-attatgcattgttcctatcaactgagctaaactc 37307933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 44473326 - 44473365
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  44473326 cttgcatattattatgcattgtccatatcaactaagctaa 44473365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 45200229 - 45200194
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| ||||||||||||||||||||||    
T  45200229 tattatgcattgtccatatcaactgagctaaactca 45200194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1285076 - 1285129
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| || ||||||||| |||||||||||||| ||||||||||| ||||||||    
T  1285076 aaccccggatcttgcatat-attatgcattgttcctatcaactgagttaaactca 1285129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 4406725 - 4406771
Alignment:
Q  9 cgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||    
T  4406725 cgaccttgcatatatttatgcattgtctatatcaactgagctaaact 4406771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7670488 - 7670435
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| ||||||||||||||| | |||||||||||| ||||    
T  7670488 aaccccggaccttgcatat-attatgcattgttcaaaccaactgagctaagctca 7670435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8290476 - 8290518
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaact 45  Q
    |||||| ||||||||||||||||||||||||| |||| |||||    
T  8290476 aaccccggaccttgcatattattatgcattgtccataccaact 8290518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 10244781 - 10244728
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  10244781 aaccccggaccttgcatat-attatgcattgtccataccaactgagctaagctca 10244728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 13955526 - 13955481
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||||||| |||||||||||| ||||    
T  13955526 accttgcatatt-ttatgcattgttcataccaactgagctaagctca 13955481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 19416568 - 19416515
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  19416568 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 19416515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 19599199 - 19599146
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||| ||||||||    
T  19599199 aaccccggaccttgcatat-attatgcattgtccataccaactgagttaaactca 19599146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21134444 - 21134494
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagcta 51  Q
    ||||||| |||||||||||||  |||||||||||  |||||||||||||||    
T  21134444 caaacccgcgaccttgcatatatttatgcattgtctatatcaactgagcta 21134494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 23198756 - 23198809
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||| ||||||||| |||||||||||||||| |||||||| ||||||||    
T  23198756 aaccccggactttgcatatt-ttatgcattgttcataccaactgagttaaactca 23198809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 38728255 - 38728209
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  38728255 accttgcatatttttatgcattgtccataccaactgagctaagctca 38728209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 43539111 - 43539164
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||| ||||| |||||||||||||| ||||||||||||||| ||||    
T  43539111 aaccccggaccttacatat-attatgcattgttcctatcaactgagctaagctca 43539164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 9522958 - 9522918
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  9522958 accttgcatat-attatgcattgttcataccaactgagctaa 9522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 36343549 - 36343586
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactga 47  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  36343549 gaccttgcatattattatgcattgtccataccaactga 36343586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 37624597 - 37624553
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgag 48  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  37624597 aacccccgaccttgcatat-attatgcattgtccataccaactgag 37624553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 39280825 - 39280873
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| |||||||||||| |||||||||||||| || ||||||||||||    
T  39280825 aaccccggaccttgcatat-attatgcattgttcttaccaactgagctaa 39280873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 3672569 - 3672612
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||    
T  3672569 cttgcatat-attatgtattgtccatatcaactgagctaaactca 3672612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 5508393 - 5508345
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcatg 59  Q
    |||||||||||| ||||||||| |  |||||| ||||||||||||||||    
T  5508393 accttgcatatttttatgcattatctatatcatctgagctaaactcatg 5508345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 19036443 - 19036479
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  19036443 ttatgcattgttcctatcaactgagttaaactcatga 19036479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 20115610 - 20115650
Alignment:
Q  25 tatgcattgttcatatcaactgagctaaactcatgaaaact 65  Q
    |||||||||| | || |||||||||||||||||||||||||    
T  20115610 tatgcattgtccctaccaactgagctaaactcatgaaaact 20115650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 20718193 - 20718157
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  20718193 ttatgcattgttcctatcaactgagttaaactcatga 20718157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 27462443 - 27462490
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagcta 51  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||    
T  27462443 aaccccggaccttgcatat-attatgcattgtccataccaactgagcta 27462490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 39043809 - 39043750
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaa 63  Q
    |||||| ||||| |||||| |||||||||||| |||| |||||||| ||| ||||||||||    
T  39043809 aaccccggacctagcatat-attatgcattgtccataccaactgagttaagctcatgaaaa 39043750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37750004 - 37750071
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaactttta 69  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  37750004 caaaccccggactttgcatat-attatgcattgttcatatcaactgagctaaactcacgagaactttta 37750071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 29652265 - 29652216
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  29652265 gaccttgcatat-attatgcattgttcttatcaactgagctaaactcatga 29652216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 39433464 - 39433411
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  39433464 aaccccagaccttgcatatt-ttatgtattgttcatatcaactgagctaagctca 39433411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 9663064 - 9663109
Alignment:
Q  7 cccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  9663064 cccgaccttacatattattatgcattgtccataccaactgagctaa 9663109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 24195303 - 24195255
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  24195303 aaccccggaccttgcatat-attatgtattgttcatatcaactgagctaa 24195255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 26991772 - 26991820
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  26991772 accttgcatat-attatgcattgtccatatcaactgagccaaactcatga 26991820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 20665704 - 20665740
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  20665704 ttatgcattgttcctatcaactgagctaaactcatga 20665740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 44068005 - 44068049
Alignment:
Q  9 cgaccttgcatattattatgcattgttcatatcaactgagctaaa 53  Q
    |||||||||||||| ||||||||||| || |||||||||||||||    
T  44068005 cgaccttgcatatttttatgcattgtccacatcaactgagctaaa 44068049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 13284290 - 13284329
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactcatgaa 61  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  13284290 tattatacattgttcatatcaactgagttaaactcatgaa 13284329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 27718908 - 27718954
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  27718908 gaccttgcatat-attatgcattgtccatatcaactgagctaagctca 27718954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 35372119 - 35372158
Alignment:
Q  18 atattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  35372119 atattattatgcattgtccttatcaactgagctaaactca 35372158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 2554219 - 2554272
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||| ||||| ||||||||||||||||| ||||    
T  2554219 aaccccagaccttgcatatt-ttatgtattgtccatatcaactgagctaagctca 2554272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 8717490 - 8717535
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||    
T  8717490 accttgcatat-attatgcattgtccataccaactgagctaaactca 8717535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 26885645 - 26885698
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| || ||| |||||| |||||||||||||||| |||||||||||||||||    
T  26885645 aaccccggatcttacatatt-ttatgcattgttcataccaactgagctaaactca 26885698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 44087290 - 44087244
Alignment:
Q  6 ccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||||||||||||| ||||||||||| |||| |||||| |||||    
T  44087290 ccccgaccttgcatatttttatgcattgtacataccaactgggctaa 44087244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34645092 - 34645129
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatat 40  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  34645092 aaccccggaccttgcatattattatgcattgtccatat 34645129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 40919373 - 40919417
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||||||||| |||||||||||||| || |||||||||||||||    
T  40919373 gaccttgcatat-attatgcattgttcctaccaactgagctaaact 40919417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 44215816 - 44215849
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| ||||||||||||||||||||    
T  44215816 ttatgcattgttcctatcaactgagctaaactca 44215849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 19245397 - 19245361
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  19245397 ttatgcattgttcctatcatctgagctaaactcatga 19245361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19260586 - 19260637
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||| |||||| ||||| |||||||||||| |||||||||| |||||||||    
T  19260586 aaccccggaccttacatat-attatgcattgtacatatcaactaagctaaact 19260637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 19318581 - 19318545
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  19318581 ttatgcattgttcctatcatctgagctaaactcatga 19318545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 30551067 - 30551103
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||||||||||  ||||||||||||||||||||||    
T  30551067 ttatgcattgttccaatcaactgagctaaactcatga 30551103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39525433 - 39525381
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  |||| ||||||  |||||||||||||||||||    
T  39525433 aacccgcgaccttgcatatatttatacattgtctatatcaactgagctaaact 39525381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 40048764 - 40048812
Alignment:
Q  4 acccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||| |||||||||||||  |||||||||||  ||||||||||||||||    
T  40048764 acccgcgaccttgcatatatttatgcattgtctatatcaactgagctaa 40048812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 19976208 - 19976154
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  19976208 aaccccggaccttgcatattattatgcattgtccataccaactgagctaaactca 19976154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 19595485 - 19595542
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||| |||||||||||    
T  19595485 aaccccagaccttgcatattattatgcatggttcataccaactgagttaaactcatga 19595542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 25186249 - 25186302
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25186249 aaccccggaccttgcatat-attatgcattgtccatatcaactgagctaaactca 25186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 16221361 - 16221409
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  16221361 accttgcatatt-ttatgcattgttcataccaactgagctaaactcatga 16221409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 29734738 - 29734692
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  29734738 gaccttgcatat-attatgcattgtccatatcaactgagctaaactca 29734692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 37119274 - 37119318
Alignment:
Q  12 ccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||    
T  37119274 ccttgcatat-attatgcattgttcatatcaactgagttaaactca 37119318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 3708413 - 3708377
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3708413 ttatgcattgttcctatcaactgagctaaactcatga 3708377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 7052826 - 7052774
Alignment:
Q  5 cccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||| ||||||||||||||||||||||||| | || |||||||||||| ||||    
T  7052826 ccccggaccttgcatattattatgcattgtccttaccaactgagctaagctca 7052774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 11869003 - 11869039
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  11869003 ttatgcattgttcctatcaactgagctaaactcatga 11869039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 35360396 - 35360432
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35360396 ttatgcattgttcctatcaactgagctaaactcatga 35360432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17280953 - 17281011
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||  ||||||||||| ||||| |||| ||||||||||||||||||| |||||||    
T  17280953 caaaccccgcaccttgcatat-attatacattattcatatcaactgagctaagctcatga 17281011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 19967454 - 19967419
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19967454 tattatgcattgttcatatcaactgagctaagctca 19967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 23718982 - 23718936
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  23718982 gaccttgcatatt-ttatgcgttgttcaaatcaactgagctaaactca 23718936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 24106654 - 24106608
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  24106654 gaccttgcatatt-ttatgcgttgttcaaatcaactgagctaaactca 24106608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 33064033 - 33063987
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  33064033 gaccttgcatat-attatgcattgtccatatcaactgagctaagctca 33063987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 39761485 - 39761439
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||    
T  39761485 gaccttgcatat-attatgcattgtccttatcaactgagctaaactca 39761439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 12124599 - 12124546
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| | || |||||||||||||||||    
T  12124599 aaccccggaccttgcatat-attatgcattgtccttaccaactgagctaaactca 12124546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 29133501 - 29133542
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  29133501 cttgcatatt-ttatgcattgttcataccaactgagctaaact 29133542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 30956480 - 30956427
Alignment:
Q  6 ccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||| ||||||||||| || |||||||||||||| |||||||||||| |||||||    
T  30956480 ccccaaccttgcatataat-atgcattgttcataccaactgagctaagctcatga 30956427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 41859906 - 41859853
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  41859906 aaccccagaccttgcatatt-ttatgcattgtccataccaactgagttaaactca 41859853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 18782547 - 18782603
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||| |||||||||||| |||||||||||||  || ||||| ||||||||||||||    
T  18782547 aaccccagaccttgcatat-attatgcattgtttctaccaacttagctaaactcatga 18782603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 19159987 - 19159951
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgag 48  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19159987 accttgcatat-attatgcattgttcatatcaactgag 19159951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 36474816 - 36474768
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| ||||||||||||| ||||||||||| | |||||||||||||||    
T  36474816 aaccccggaccttgcatatt-ttatgcattgtccctatcaactgagctaa 36474768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 833075 - 833122
Alignment:
Q  2 aaacccccgaccttgcatattattatgcattgttcatatcaactgagct 50  Q
    ||||||| |||||||||||| |||||||||||| |||| ||||||||||    
T  833075 aaaccccagaccttgcatat-attatgcattgtccataccaactgagct 833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13143164 - 13143104
Alignment:
Q  1 caaacccccgaccttgcatattattatgca----ttgttcatatcaactgagctaaactcat 58  Q
    |||||||||||||||||||| |||||||||    ||||||||| ||||||| ||||||||||    
T  13143164 caaacccccgaccttgcata-tattatgcattgtttgttcataccaactgaactaaactcat 13143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16204822 - 16204877
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||| |||||||||||| |||||||||||| | ||||||||||| ||| ||||    
T  16204822 caaaccccagaccttgcatat-attatgcattgtccttatcaactgagttaagctca 16204877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 30978416 - 30978357
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaa 63  Q
    |||||| |||||||||||| |||||||||| | |||| ||| |||||||||||||| ||||    
T  30978416 aacccctgaccttgcatat-attatgcattatccataccaattgagctaaactcattaaaa 30978357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 32901428 - 32901381
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcat 58  Q
    |||||| |||||| ||||||||| | |||||||||||||||||||||||    
T  32901428 gacctttcatatt-ttatgcattatccatatcaactgagctaaactcat 32901381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 34464426 - 34464469
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||    
T  34464426 cttgcatat-attatgcattgtccataccaactgagctaaactca 34464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 35685075 - 35685122
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcat 58  Q
    |||||||||||| |||||||||||| | || ||||||||||||||||||    
T  35685075 gaccttgcatat-attatgcattgtccttaccaactgagctaaactcat 35685122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39068713 - 39068768
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||| || ||||||||| |||||||||||| | ||||||||||||||| ||||    
T  39068713 caaaccccggatcttgcatat-attatgcattgtccttatcaactgagctaagctca 39068768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 40853827 - 40853878
Alignment:
Q  5 cccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||| |||||||||||| |||||||||  ||||||||||||||||||| ||||    
T  40853827 ccccggaccttgcatat-attatgcatatttcatatcaactgagctaagctca 40853878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42066768 - 42066713
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||| |||||||||||| ||| |||||||| |||| |||||||||||| ||||    
T  42066768 caaaccccggaccttgcatat-attgtgcattgtccataccaactgagctaagctca 42066713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 3393583 - 3393628
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  3393583 accttgcatat-attatgcattgttcatatcaactgagctaaactca 3393628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 24752654 - 24752708
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  24752654 aaccccagaccttgcatattattatgcattgtccataccaactgagctaagctca 24752708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 39452508 - 39452461
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  39452508 gaccttgcatatttttatgcattgttcataccaactgagctaagctca 39452461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 15549250 - 15549292
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  15549250 gaccttgcatattattatgcattgtctatatcaactgagctaa 15549292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34521197 - 34521250
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||||||||    
T  34521197 aaccccggaccttgcatat-attatgcattgtccataccaactgagctaaactca 34521250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 44641581 - 44641528
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| | |||||||||| |||||||||||| ||||||||||||||||||||||    
T  44641581 aaccccgggccttgcatat-attatgcattgtccatatcaactgagctaaactca 44641528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 45701375 - 45701322
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaac 64  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  45701375 gaccttacatatt-ttatgcattgttcataccaactgagctaaactcacgaaaac 45701322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 925434 - 925487
Alignment:
Q  4 acccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  925434 accccggaccttgcatatttttatgcattgtccatatcaactgaactaagctca 925487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7158829 - 7158774
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| || ||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  7158829 caaactccggaccttgcatatt-ttatgcattgtccatatcaactgggctaaactca 7158774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 12214047 - 12213994
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  12214047 aaccccagaccttgcatat-attatgtattgttcctatcaactgagctaagctca 12213994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 14907042 - 14907096
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| ||||||||||| ||||||||||| ||| |||| ||| ||||    
T  14907042 aacccccgaccttacatattattatacattgttcataccaattgagttaagctca 14907096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 17917153 - 17917198
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  17917153 accttacatatt-ttatgcattgtccatatcaactgagctaaactca 17917198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 21965898 - 21965952
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||| ||||  ||||||||| ||||||||||||||||||| ||||    
T  21965898 aaccccggaccttgtatatatttatgcattattcatatcaactgagctaagctca 21965952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 23203368 - 23203315
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaact 65  Q
    |||||||||||| |||||||||||||  | |||||||||||| ||||||||||||    
T  23203368 accttgcatatt-ttatgcattgttccaaccaactgagctaagctcatgaaaact 23203315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 26755670 - 26755617
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| || ||||||||| ||||||||||||||||| ||||    
T  26755670 aaccccggaccttgcatat-ataatgcattgtccatatcaactgagctaagctca 26755617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 29233981 - 29234034
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  29233981 aaccccagaccttgcatatt-ttatgcattgtctataccaactgagctaaactca 29234034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 29450996 - 29451042
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||||||||||||||| |||| |||||||| ||| ||||    
T  29450996 accttgcatattattatgcattgtccataccaactgagttaagctca 29451042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 40021418 - 40021376
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||    
T  40021418 gaccttgtatattattatgcattgtccataccaactgagctaa 40021376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 42888629 - 42888576
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  42888629 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 42888576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 48646732 - 48646786
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||||||||||||||| ||||  ||||||| ||| ||||    
T  48646732 aaccccggaccttgcatattattatgcattgtccatacaaactgagttaagctca 48646786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 48681948 - 48681993
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  48681948 accttgcatat-attatgcattgttcataccaactgagctaagctca 48681993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 50727337 - 50727299
Alignment:
Q  15 tgcatattattatgcattgttcatatcaactgagctaaa 53  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  50727337 tgcatattattatgcattgttcataccaactgatctaaa 50727299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 13778819 - 13778876
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||| ||||||  |||||||||||||| || |||||||||| |||||| |||||||    
T  13778819 aaccccggaccttatatattattatgcatcgtccatatcaactaagctaagctcatga 13778876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 30561770 - 30561722
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcatg 59  Q
    |||||||||||| |||||||||||||| || ||||| |||||||||||||    
T  30561770 gaccttgcatat-attatgcattgttcttaccaacttagctaaactcatg 30561722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 45774629 - 45774584
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgag 48  Q
    |||||| ||||||||||||||||||| |||||| ||| ||||||||    
T  45774629 aaccccggaccttgcatattattatgtattgtttataccaactgag 45774584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20006127 - 20006071
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||  ||| |||||||||||||||||||| ||| ||||||||| ||| ||||    
T  20006127 caaaccccgaaccctgcatattattatgcattgtccatgtcaactgagttaatctca 20006071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28053247 - 28053291
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactga 47  Q
    ||||| ||||||| |||||||||||||||||| |||| |||||||    
T  28053247 aaccctcgaccttacatattattatgcattgtccataccaactga 28053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 39879232 - 39879284
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  |||| ||||||  |||||||||||||||||||    
T  39879232 aacccgcgaccttgcatatatttatacattgtctatatcaactgagctaaact 39879284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 34828354 - 34828307
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||    
T  34828354 gaccttacatattattatgcattgtccataccaactgagctaaactca 34828307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 247379 - 247343
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  247379 ttatgcattgttcctatcaactgagctaaactcatga 247343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 33975963 - 33975927
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33975963 ttatgcattgttcctatcaactgagctaaactcatga 33975927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 13496163 - 13496117
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  13496163 gaccttgcatat-attatgcattgttcatatcaactgagttaagctca 13496117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 14036299 - 14036334
Alignment:
Q  17 catattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14036299 catattattatgcattgttcataccaactgagctaa 14036334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 24623342 - 24623377
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24623342 tattatgcattgtccatatcaactgagctaaactca 24623377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 8138465 - 8138514
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaa 53  Q
    |||||| |||||| ||||| |||||||||||||| ||||||||||||||||    
T  8138465 aaccccagaccttacatat-attatgcattgttcttatcaactgagctaaa 8138514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 9111101 - 9111048
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||| |||| ||||    
T  9111101 aaccccggaccttgcatat-attatgcattgttcataccaactgaactaagctca 9111048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 12904332 - 12904377
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  12904332 accttgcatat-attatgcattgttcatatcaactgaggtaagctca 12904377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 14350995 - 14350950
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  14350995 accttgtatatt-ttatgcattgttcatatcaactgagttaaactca 14350950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 20744192 - 20744139
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  20744192 aaccccagaccttgcatat-attatgcattgtccataccaactgagctaagctca 20744139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 32193874 - 32193919
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||    
T  32193874 accttgcatat-attatgcattgttcttaccaactgagctaaactca 32193919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 33938694 - 33938739
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  33938694 accttgcatat-attatgcattgttcataccaactgagctaagctca 33938739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 33824935 - 33824887
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| |||||||||||| |||||||||||| | |||||||||||||||    
T  33824935 aaccccggaccttgcatat-attatgcattgtccttatcaactgagctaa 33824887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 6018666 - 6018718
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  |||| ||||||  |||||||||||||||||||    
T  6018666 aacccacgaccttgcatatatttatacattgtctatatcaactgagctaaact 6018718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 12582570 - 12582606
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  12582570 ttatgcattgttcctatcaactgaactaaactcatga 12582606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12700426 - 12700481
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||  |||||||||||| ||||||||||||||||| ||||||| |||| ||||    
T  12700426 caaaccctagaccttgcatat-attatgcattgttcataccaactgaactaagctca 12700481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16204797 - 16204848
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||| |||||||||||  |||||||||||| ||||||||| ||||||||||    
T  16204797 aaccccggaccttgcatac-attatgcattgtccatatcaaccgagctaaact 16204848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 20720789 - 20720848
Alignment:
Q  4 acccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaac 64  Q
    ||||| |||||| ||||| |||||||||||| |||| |||||||||||| |||| ||||||    
T  20720789 accccggaccttacatat-attatgcattgtccataacaactgagctaagctcacgaaaac 20720848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 34319107 - 34319071
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  34319107 ttatgcattgttcctatcatctgagctaaactcatga 34319071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 51505919 - 51505873
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcat 58  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  51505919 accttgcatatt-ttatgcattgtccatatcaactgagctaaactcat 51505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 47313386 - 47313432
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||    
T  47313386 accttgcatattattatgcattgtccataccaactgagctaagctca 47313432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 38894091 - 38894043
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  38894091 aaccccggaccttgcatatt-ttatacattgttcatatcaactgagctaa 38894043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 52576001 - 52575953
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  52576001 aaccccagaccttgcatatt-ttatgcattgttcataccaactgagctaa 52575953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 916237 - 916201
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  916237 ttatgcattgttcctatcaactgagctaaactcatga 916201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 5030246 - 5030206
Alignment:
Q  17 catattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  5030246 catattattatgcattgttcataccaactgaactaaactca 5030206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21506763 - 21506818
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  21506763 caaaccccagaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 21506818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 40862220 - 40862177
Alignment:
Q  9 cgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||    
T  40862220 cgaccttacatattattatacattgttcataacaactgagctaa 40862177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 43345021 - 43345067
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||    
T  43345021 gaccttgcatat-attatgtattgttcataccaactgagctaaactca 43345067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 43490431 - 43490477
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  43490431 gaccttgcatat-attatgcattgttcataccaactgagctaagctca 43490477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 44582779 - 44582732
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagct 50  Q
    |||||| ||||||||||||||||||||||||  |||| ||||||||||    
T  44582779 aaccccggaccttgcatattattatgcattgcccataccaactgagct 44582732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 4216409 - 4216454
Alignment:
Q  6 ccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||||||||||||| |||||||||||| | |||||||||||||||    
T  4216409 ccccgaccttgcatat-attatgcattgtccttatcaactgagctaa 4216454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 20370296 - 20370341
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  20370296 accttgcatatt-ttatgcattgtccatatcaactgagctaagctca 20370341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 25340931 - 25340984
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  25340931 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 25340984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 25874185 - 25874131
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||| |||||||||||||||||| |||| |||||||| ||| ||||    
T  25874185 aaccccggaccttacatattattatgcattgtccataccaactgagttaagctca 25874131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 28244111 - 28244164
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| |||||||||||||||| |||||||| ||| ||||    
T  28244111 aaccccggaccttgcatatt-ttatgcattgttcataccaactgagttaagctca 28244164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 32629134 - 32629081
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  32629134 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 32629081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 33745153 - 33745100
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  33745153 aaccccagaccttgcatatt-ttatgcattgtccatatcaattgagctaagctca 33745100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 44579690 - 44579637
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  44579690 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 44579637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 49088798 - 49088753
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| |||||| |||||||||||| |||||||||||||||||||||    
T  49088798 accttacatatt-ttatgcattgtttatatcaactgagctaaactca 49088753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 51379798 - 51379839
Alignment:
Q  15 tgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  51379798 tgcatatt-ttatgcattgttcatatcaactgaggtaaactca 51379839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 53996353 - 53996300
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  53996353 aaccccagaccttgcatat-attatgcattgtccataccaactgagctaagctca 53996300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 25441507 - 25441555
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| |||||||||||| |||||||||||| |||| ||||||||||||    
T  25441507 aaccccagaccttgcatat-attatgcattgtccataccaactgagctaa 25441555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 29631232 - 29631184
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||| |||||||||||| |||| |||||||||||| |||||||    
T  29631232 accttgcatat-attatgcattgtccataccaactgagctaagctcatga 29631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 39100098 - 39100142
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||||||||| ||||||||||||| ||| |||||||||||||||    
T  39100098 gaccttgcatat-attatgcattgtttataacaactgagctaaact 39100142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 51402738 - 51402771
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaact 55  Q
    ||||||||||||| ||||||||||||||||||||    
T  51402738 tattatgcattgtccatatcaactgagctaaact 51402771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 38911206 - 38911170
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  38911206 ttatgcattgtttatatcaattgagctaaactcatga 38911170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 44075497 - 44075533
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  44075497 ttatgcattgttcctatcaactgagctaaagtcatga 44075533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 3936681 - 3936628
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  3936681 aaccccggaccttgcatat-attatgcattgttcataccaactgagctaagctca 3936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 19479484 - 19479537
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  19479484 aaccccggaccttgcatat-attatgcattgttcatattaactgagctaagctca 19479537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 35287514 - 35287567
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  35287514 aaccccggaccttgcatatt-ttatgcattgttcataccaactgagctaagctca 35287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 11949770 - 11949826
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||| |||||||    
T  11949770 aaccccggaccttgcatat-attatgcattgtccataccaactgagctaagctcatga 11949826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 19935169 - 19935221
Alignment:
Q  4 acccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||| ||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  19935169 accctcgaccttgcatag-attatgcattgttcttatcaactgagctaaactca 19935221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 22040696 - 22040652
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactc 56  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  22040696 accttgcatat-attatgcattgtccatatcaactgagctaaactc 22040652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 10262110 - 10262146
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10262110 ttatgcattgttcctatcaactgagctaaactcatga 10262146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 19587873 - 19587837
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  19587873 ttatgcattgttcctatcaactgagctaaactcatga 19587837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 20403182 - 20403229
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcat 58  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  20403182 gaccttgcatat-attatgcattgttcctatcaactgagctaagctcat 20403229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 21562345 - 21562309
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21562345 ttatgcattgttcctatcaactgagctaaactcatga 21562309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 24080181 - 24080217
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24080181 ttatgcattgttcctatcaactgagctaaactcatga 24080217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 43329866 - 43329830
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43329866 ttatgcattgttcctatcaactgagctaaactcatga 43329830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 35998035 - 35998000
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35998035 tattatgcattgtccatatcaactgagctaaactca 35998000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 48251923 - 48251969
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactcat 58  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  48251923 accttgcatat-attatacattgttcatatcaactgagctaaattcat 48251969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 56361827 - 56361874
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  56361827 gaccttgtatattatcatgcattgttcatatcaactgagttaagctca 56361874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 897479 - 897422
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaa 61  Q
    |||||| |||||| ||||| ||||| |||||| |||| |||||||||||||||||||||    
T  897479 aaccccggaccttacatat-attatacattgtccataccaactgagctaaactcatgaa 897422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 9946481 - 9946428
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  9946481 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 9946428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 12698651 - 12698598
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| || |||||||||||||| ||||    
T  12698651 aaccccagaccttgcatat-attatgcattgtccaaatcaactgagctaagctca 12698598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 20383542 - 20383489
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  20383542 aaccccggaccttgcatat-attatgcattgtccataccaactgagctaagctca 20383489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 28435263 - 28435308
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||    
T  28435263 accttgcatat-attatgcattgtccataccaactgagctaaactca 28435308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 39171385 - 39171430
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  39171385 accttgcatatt-ttatgcattgtccatatcaactgagctaagctca 39171430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 43374287 - 43374332
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  43374287 accttgcatatt-ttatgcattgtccatatcaactgagctaagctca 43374332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 675972 - 675912
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaac 64  Q
    |||||| |||||||||||| |||||||||||| || | |||||||||||| |||||| ||||    
T  675972 aaccccggaccttgcatat-attatgcattgtccaaaccaactgagctaagctcatgcaaac 675912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 16304112 - 16304156
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||    
T  16304112 gaccttgcatat-attatgcattgtccataccaactgagctaaact 16304156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 16431670 - 16431622
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    |||||| ||||||||||||| ||||||||||| |||| ||||||||||||    
T  16431670 aaccccagaccttgcatatt-ttatgcattgtccataccaactgagctaa 16431622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 19347335 - 19347375
Alignment:
Q  12 ccttgcatattattatgcattgttcatatcaactgagctaaa 53  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  19347335 ccttgcatatt-ttatgcattgtccatatcaactgagctaaa 19347375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 29099716 - 29099765
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||| |||||||||||||  |||||||||||  ||||||||||||||||    
T  29099716 aacccgcgaccttgcatatatttatgcattgtctatatcaactgagctaa 29099765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 52620619 - 52620570
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||| |||||||||||||  |||||||||||  ||||||||||||||||    
T  52620619 aacccgcgaccttgcatatatttatgcattgtctatatcaactgagctaa 52620570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18138317 - 18138265
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  ||||||||||   |||||||||||||||||||    
T  18138317 aacccgcgaccttgcatatatttatgcattgactatatcaactgagctaaact 18138265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 22578974 - 22578930
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaac 54  Q
    |||||| |||||| |||| ||||||||||||||||||| ||||||    
T  22578974 gaccttacatatttttatacattgttcatatcaactgaactaaac 22578930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 46676505 - 46676560
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatg 59  Q
    |||||| |||||||||||| |||||||||||| | || |||||||||||| ||||||    
T  46676505 aaccccggaccttgcatat-attatgcattgtccttaccaactgagctaagctcatg 46676560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 49125526 - 49125474
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  ||||||||||   |||||||||||||||||||    
T  49125526 aacccgcgaccttgcatatatttatgcattgactatatcaactgagctaaact 49125474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 51449932 - 51449896
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  51449932 ttatgtattgttcctatcaactgagctaaactcatga 51449896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 37461831 - 37461795
Alignment:
Q  24 ttatgcattgttcatatcaactgagctaaactcatga 60  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37461831 ttatgcattgttcctatcaactgagctaaactcatga 37461795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 13351489 - 13351454
Alignment:
Q  25 tatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||||||||| |||||||||||||||||||||||    
T  13351489 tatgcattgttcctatcaactgagctaaactcatga 13351454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16166380 - 16166431
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||| |||||||||||||  |||||||||||  ||||||||||||||||    
T  16166380 caaacccgcgaccttgcatatatttatgcattgtctatatcaactgagctaa 16166431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 18147754 - 18147715
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactcatgaa 61  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  18147754 tattatgcattgtccttatcaactgagctaaactcatgaa 18147715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 18589873 - 18589927
Alignment:
Q  2 aaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||| ||| ||||    
T  18589873 aaaccccggaccttgcatat-attatgcattgttcataccaactgagttaagctca 18589927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 27479637 - 27479688
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaac 54  Q
    |||||| |||||||||||||||||| |||||| | ||||||||||| |||||    
T  27479637 aaccccagaccttgcatattattatacattgtacttatcaactgagttaaac 27479688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 31561357 - 31561404
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||||||||||||||||| |||| |||||||| ||| ||||    
T  31561357 gaccttgcatattattatgcattgtccataccaactgagttaagctca 31561404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 32283627 - 32283580
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||||||||| |||| |||||||||||| ||||    
T  32283627 gaccttacatattattatgcattgtccataccaactgagctaagctca 32283580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 33584120 - 33584085
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||||||||||||||||||||    
T  33584120 tattatacattgttcatatcaactgagctaaactca 33584085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 7713578 - 7713533
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  7713578 accttgcatat-attatgcattattcatatcaactgagttaaactca 7713533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 10704338 - 10704391
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  10704338 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 10704391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 27903159 - 27903114
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  27903159 accttgcatat-attatgcattgttcataccaactgaactaaactca 27903114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 31708153 - 31708198
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagc 49  Q
    |||||| |||||||||||| ||||||||||||||||| |||||||||    
T  31708153 aaccccagaccttgcatat-attatgcattgttcataccaactgagc 31708198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 37932384 - 37932331
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||||| ||||    
T  37932384 aaccccggaccttgcatat-attatgcattgtccataccaactgagctaagctca 37932331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 40715956 - 40716009
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| |||||||||||| |||||||||||| |||||||| |||||||| ||||    
T  40715956 aaccccggaccttgcatat-attatgcattgtccatatcaattgagctaagctca 40716009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 1488409 - 1488364
Alignment:
Q  13 cttgcatattattatgcattgttcatatcaactgagctaaactcat 58  Q
    |||||||||| ||||||||||| |||| |||||||||||| |||||    
T  1488409 cttgcatatttttatgcattgtccataccaactgagctaagctcat 1488364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 5150089 - 5150146
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatga 60  Q
    |||||| |||||| |||||||||||||||||| ||||  ||||||| ||| |||||||    
T  5150089 aaccccagaccttacatattattatgcattgtccatactaactgaggtaacctcatga 5150146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 13409586 - 13409553
Alignment:
Q  22 tattatgcattgttcatatcaactgagctaaact 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  13409586 tattatgcattgttcttatcaactgagctaaact 13409553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 13796383 - 13796331
Alignment:
Q  4 acccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||| ||| ||||    
T  13796383 accccagaccttgcatat-attatgcattgttcatatcgactgagttaagctca 13796331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 26655518 - 26655458
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaac 64  Q
    |||||| |||||| ||||| |||||||||||| |||| |||||||||| | |||||||||||    
T  26655518 aaccccggaccttacatat-attatgcattgtccataccaactgagctgagctcatgaaaac 26655458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 26927103 - 26927043
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaac 64  Q
    |||||| |||||| ||||| |||||||||||| |||| |||||||||| | |||||||||||    
T  26927103 aaccccggaccttacatat-attatgcattgtccataccaactgagctgagctcatgaaaac 26927043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 31602840 - 31602880
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaa 52  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  31602840 accttgcatat-attatgcattgttcataccaactgagctaa 31602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18489081 - 18489136
Alignment:
Q  1 caaacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| || |||||||||||| ||||||||||||  ||| |||||||||||||||||    
T  18489081 caaactccagaccttgcatat-attatgcattgtctataccaactgagctaaactca 18489136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 29382669 - 29382721
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    ||||| |||||||||||||  |||| ||||||  |||||||||||||||||||    
T  29382669 aacccgcgaccttgcatatatttatacattgtctatatcaactgagctaaact 29382721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1425 - 1479
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||| ||||||||||||||||||||| |||| |||||| ||||| ||||    
T  1425 aaccccagacgttgcatattattatgcattgtccataccaactgtgctaagctca 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 1582 - 1529
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||    
T  1582 aaccccggaccttgcatatt-ttatgcattgtccataccaactgagctaagctca 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 37589 - 37536
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    |||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||||    
T  37589 aaccccggaccttgcatatt-ttatgcattgttcataccaacttagctaagctca 37536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14201 - 14246
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  14201 accttgcatat-attatgcattgttcataccaactgagttaaactca 14246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 47255 - 47308
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgagctaaactcatgaaaac 64  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| |||| ||||||    
T  47255 gaccttgcatatt-ttatgcattgtccataccaactgagctaagctcacgaaaac 47308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 189604 - 189642
Alignment:
Q  10 gaccttgcatattattatgcattgttcatatcaactgag 48  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  189604 gaccttgcatattattatgcattgtccataccaactgag 189642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 244526 - 244480
Alignment:
Q  11 accttgcatattattatgcattgttcatatcaactgagctaaactca 57  Q
    ||||| |||||| ||||||||||| ||||||||||||||||| ||||    
T  244526 accttacatatttttatgcattgtccatatcaactgagctaagctca 244480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5467 - 5416
Alignment:
Q  3 aacccccgaccttgcatattattatgcattgttcatatcaactgagctaaact 55  Q
    |||||| ||||||||||||| ||||||||||| |||| |||| ||||||||||    
T  5467 aaccccagaccttgcatatt-ttatgcattgtccataccaaccgagctaaact 5416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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