View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6452_high_5 (Length: 203)
Name: NF6452_high_5
Description: NF6452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6452_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 4686545 - 4686705
Alignment:
| Q |
22 |
caatataataacaagaacaataacaataattatacgaaaatataaaaaa---gggaattcaagaaattttacagtgtattggcaaattgaatatcagctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686545 |
caatataataacaagaacaataacaataattatagaaaaaaaaaaaaaaagggggaattcaagaaattttacagtgtattggcaaattgaatatcagctt |
4686644 |
T |
|
| Q |
119 |
caagagctttaagagaatccttgaaagacttgcgcatctctcccatcaccataatcacttt |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686645 |
caagagctttaagagaatccttgaaagacttgcgcatctctcccatcaccataatcacttt |
4686705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 24968425 - 24968493
Alignment:
| Q |
87 |
ttacagtgtattggcaaattgaatatcagcttcaagagctttaagagaatccttgaaagacttgcgcat |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
24968425 |
ttacagtgtattagcaaattgaatatcagcttcaagagctttgagagaatccttgaaagactttcgcat |
24968493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University