View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6452_high_6 (Length: 202)
Name: NF6452_high_6
Description: NF6452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6452_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 1191685 - 1191864
Alignment:
| Q |
16 |
ctttcaacagtctctttctcaaacctcgttccagcattgccaataaagctattaccaggctctggttttcgaactctcctttcttgcattgatcctctct |
115 |
Q |
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| T |
1191685 |
ctttcaacagtctctttctcaaacctcgttccagcattgccaataaagctattaccaggctctggttttcgaactctcctttcttgcattgatcctctct |
1191784 |
T |
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| Q |
116 |
tgcttgcatacatgttccaattccaatagatgttttcttagcttctcaccaagttcaacatttccatattcttcgacatgc |
196 |
Q |
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| T |
1191785 |
tgcttgcatacatattccaattccaatagatgttttcttaccttctcaccaagttcaacatttccataat-ttcgacatgc |
1191864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 155246 - 155345
Alignment:
| Q |
16 |
ctttcaacagtctctttctcaaacctcgttccagcattgccaataaagctattaccaggctctggttttcgaactctcctttcttgcattgatcctctct |
115 |
Q |
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||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
155246 |
ctttcaacaatctctttctcaaacctcgttccaggaatgccaataaagctattaccaggctctggtttccgaactctcctttcttgcattgatcttctct |
155345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 155421 - 155487
Alignment:
| Q |
129 |
gttccaattccaatagatgttttcttagcttctcaccaagttcaacatttccatattcttcgacatgc |
196 |
Q |
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| T |
155421 |
gttccaattccattagatgttttcttaccttctcaccaagctcaacatttccataat-ttcgacatgc |
155487 |
T |
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