View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6452_low_2 (Length: 291)
Name: NF6452_low_2
Description: NF6452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6452_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 20722261 - 20722520
Alignment:
| Q |
11 |
aatgagctaacatattttgaaaagcaggtactaccactcatgtttcttagtcttgctatcaatggaaaatatttatactcttatatttgaatgtgaaatg |
110 |
Q |
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| T |
20722261 |
aatgagctaacatattttgaaaagcaggtactaccactcatgtttcttagtcttgctatcaatggaaaatatttatactcttatatttgaatgtgaaatg |
20722360 |
T |
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| Q |
111 |
ttctgtgttctctactgattcattcttttgctcaatgaataatagtggtatctgccatactaattatgagtttgagagaaacttactatcttcttgcatt |
210 |
Q |
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| T |
20722361 |
ttctgtgttctctactgattcattcttttgctcaatgaataatagtggtatctgccatactaat--tgagtttgagagaaacttactatcttcttgcatt |
20722458 |
T |
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| Q |
211 |
tacagttgattatatatattaacttggtgcttcctcnnnnnnnatgaaaagtaaactttttt |
272 |
Q |
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| T |
20722459 |
tacagttgattatatatattaacttggtgcttcctctttttttatgaaaagtaaactttttt |
20722520 |
T |
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