View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6452_low_3 (Length: 251)
Name: NF6452_low_3
Description: NF6452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6452_low_3 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36137725 - 36137483
Alignment:
| Q |
1 |
acacccgttgcccgatttatccattgagaacaaaagattnnnnnnngacaacgacaaattgaaaggtgaatcggcacttgcgaagaagtagtgcgacaag |
100 |
Q |
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| T |
36137725 |
acacccgttgcatgatttatccattgagaacaaaagattaaaaaaagacaacgagaaattgaaaggtgaatcggcacttgcgaagaagtagtgcaacaag |
36137626 |
T |
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| Q |
101 |
ttagtagcttttctacaggacattgtcaatgtgggaccagatcagattaattgcatgatcgacaagagacaagtgggtccatccctgacgtggtgtgttt |
200 |
Q |
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| T |
36137625 |
ttagtagcttttctacaggacattgtcaatgtgggaccagatcagattaattgcatgatcgacaagagacaagtgggtccatccctgacgtggtgcgttt |
36137526 |
T |
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| Q |
201 |
ggatgatgacaatattgcaataggtgaatgtagagcctttgtt |
243 |
Q |
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| T |
36137525 |
ggatgatgacaatattgcaataggtgaatgtagagcctttgtt |
36137483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 41340156 - 41339989
Alignment:
| Q |
14 |
gatttatccattgagaacaaaagattnnnnnnngacaacgacaaattgaaaggtgaatcggcacttgcgaagaagtagtgcgacaagttagtagcttttc |
113 |
Q |
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| T |
41340156 |
gatttatccagtgagaacaaaagattaaaaaaagacaacgataaattgaccggtgaattggcacttgcgaagaagtggtgcgacaagttagtagcttttc |
41340057 |
T |
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| Q |
114 |
tacaggacattgtcaatgtgggaccag---atcagattaattgcatgatcgacaagagacaagtgggt |
178 |
Q |
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| T |
41340056 |
tacaggacattgtcaatgtgggatcagatcatcagattaaccgcatcatcgacaaaggacaagtgggt |
41339989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 41339980 - 41339939
Alignment:
| Q |
202 |
gatgatgacaatattgcaataggtgaatgtagagcctttgtt |
243 |
Q |
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| T |
41339980 |
gatgatgacaacattgcaataggtgaatgtagagcctttgtt |
41339939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 23023 - 23095
Alignment:
| Q |
171 |
aagtgggtccatccctgacgtggtgtgtttggatgatgacaatattgcaataggtgaatgtagagcctttgtt |
243 |
Q |
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| T |
23023 |
aagtgggtccaaccttgacgtggtgcgttttgactatgacgatattgcaataggcgaatcttgagcctttgtt |
23095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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