View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6452_low_4 (Length: 237)
Name: NF6452_low_4
Description: NF6452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6452_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 36138026 - 36138158
Alignment:
| Q |
89 |
atgtctttgccatcttatcaggctttttgtgtgatcatttatgaagttttgtttcattgaattgaacagtgctccacaagattgtgaaaacgtattccat |
188 |
Q |
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| T |
36138026 |
atgtctttgccatcttatcaggctttttgtgtgatcatttatgaagttttgtttcattgaattgaacagtgttccacaagattgtgaaaacgtattccat |
36138125 |
T |
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| Q |
189 |
atttttaattatcatcatgacttacaaacaaac |
221 |
Q |
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| T |
36138126 |
atttttaattatcatcatgacttacaaacaaac |
36138158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36137901 - 36138004
Alignment:
| Q |
1 |
ataggttccagcagttattggtcaggttcatgagaatgtagaatgtgacagatttatcattttgcacaagttaaagatattgttaattatgtctttgcca |
100 |
Q |
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| T |
36137901 |
ataggttccagcagttattggtcaggttcatgagaatgtagaatgtgacagatttatcattttgcacaagttaaagatattgttaattatgtctttgcca |
36138000 |
T |
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| Q |
101 |
tctt |
104 |
Q |
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|||| |
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| T |
36138001 |
tctt |
36138004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 41340245 - 41340368
Alignment:
| Q |
30 |
atgagaatgtagaatgtgacagatttatcattttgcacaagttaaagatattgttaattatgtctttgccatcttatcaggctttttgtgtgatcattta |
129 |
Q |
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| T |
41340245 |
atgagaatgtagaatgtgacagatttatcattttgcacaagttaaagatattgttgattttgtc-ttgccatcatatcagcctttttgtgtgatcattta |
41340343 |
T |
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| Q |
130 |
tgaagttttgtttcattgaattgaacagtg |
159 |
Q |
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| T |
41340344 |
tga-----tgcttcattgaattgaacagtg |
41340368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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