View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_102 (Length: 263)
Name: NF6453A_low_102
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_102 |
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| [»] scaffold0147 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 2499 - 2242
Alignment:
| Q |
6 |
agaatcagagatgaccaaataataataacaattattaaaatacacaataaaaccctannnnnnncttcattgttatgaaataataatacacaagaaagtg |
105 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
2499 |
agaatcagaaatgaccaaataataataacaattattaaaatacacaataaaaccctatttttttcttcattgttatgaaataataatacacaagaaaatg |
2400 |
T |
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| Q |
106 |
catcattataaatagaagcaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaa |
205 |
Q |
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| T |
2399 |
catcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaa |
2300 |
T |
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| Q |
206 |
agcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtaga |
263 |
Q |
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| T |
2299 |
agcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtaga |
2242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 3451718 - 3451461
Alignment:
| Q |
6 |
agaatcagagatgaccaaataataataacaattattaaaatacacaataaaaccctannnnnnncttcattgttatgaaataataatacacaagaaagtg |
105 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
3451718 |
agaatcagaaatgaccaaataataataacaattattaaaatacacaataaaaccctatttttttcttcattgttatgaaataataatacacaagaaaatg |
3451619 |
T |
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| Q |
106 |
catcattataaatagaagcaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaa |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451618 |
catcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaa |
3451519 |
T |
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| Q |
206 |
agcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtaga |
263 |
Q |
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| T |
3451518 |
agcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtaga |
3451461 |
T |
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