View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_105 (Length: 260)
Name: NF6453A_low_105
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_105 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 11051137 - 11051279
Alignment:
| Q |
25 |
ggggaccaaatttaagagtataactcataaagaaaaggaataattttcaaatgtataacaaatagaagaaattccgagcaccattgagacaaatctgcaa |
124 |
Q |
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| T |
11051137 |
ggggaccaaatttaagagtataactcataaagaaaaagaataattttcaaatgtataacaaatagaagaaattacgagcaccattgagacaaatccgcaa |
11051236 |
T |
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| Q |
125 |
aatgtttaaaagagagtgatttagtttgcgactcaacctaatat |
168 |
Q |
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| T |
11051237 |
aatgtttaaaa-atggtgatttagttcgcgactcaacctaatat |
11051279 |
T |
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