View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_107 (Length: 258)
Name: NF6453A_low_107
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_107 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 37704699 - 37704456
Alignment:
| Q |
15 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
114 |
Q |
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| T |
37704699 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatga |
37704600 |
T |
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| Q |
115 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
214 |
Q |
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| T |
37704599 |
acaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaat |
37704500 |
T |
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| Q |
215 |
acgtagactcaatttgcaaacaatctaataagtcaacctttttg |
258 |
Q |
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| T |
37704499 |
acgtagactcaatttgcaaacaatctaataagtcaacctttttg |
37704456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 37699224 - 37698975
Alignment:
| Q |
15 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagttta |
110 |
Q |
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| T |
37699224 |
atgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagttta |
37699125 |
T |
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| Q |
111 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
210 |
Q |
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| T |
37699124 |
atgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagg |
37699025 |
T |
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| Q |
211 |
gaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttg |
258 |
Q |
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| T |
37699024 |
gaatacctagactcaatgtttgtaaacaatctaataactcaaactttttg |
37698975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 37437764 - 37437522
Alignment:
| Q |
15 |
atgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagttta |
110 |
Q |
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| T |
37437764 |
atgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagttta |
37437669 |
T |
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| Q |
111 |
atgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagg |
210 |
Q |
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| T |
37437668 |
atgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagg |
37437570 |
T |
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| Q |
211 |
gaatacgtagactcaatttgcaaacaatctaataagtcaacctttttg |
258 |
Q |
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| T |
37437569 |
gaatagctagactgaatttgtaaacaatctaataagtcagactttttg |
37437522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 37698861 - 37698638
Alignment:
| Q |
15 |
atgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttagttt |
109 |
Q |
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| T |
37698861 |
atgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttagttt |
37698762 |
T |
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| Q |
110 |
aatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataag |
209 |
Q |
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| T |
37698761 |
aacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaataag |
37698687 |
T |
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| Q |
210 |
ggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttg |
258 |
Q |
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| T |
37698686 |
ggaatacttagactcaatttgtaaacaatctaataagtcaaactttttg |
37698638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 16841007 - 16841109
Alignment:
| Q |
30 |
tatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttc |
128 |
Q |
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| T |
16841007 |
tatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttg |
16841105 |
T |
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| Q |
129 |
tatg |
132 |
Q |
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|||| |
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| T |
16841106 |
tatg |
16841109 |
T |
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