View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453A_low_115 (Length: 252)
Name: NF6453A_low_115
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_115 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 28384660 - 28384814
Alignment:
| Q |
9 |
aacatagataacactattcatggttggattaattttgattctgatgaacctgttggtttttggatgataacacctagtaatgaatttcgtaatggtggac |
108 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28384660 |
aacacagataacactgttcatggttggattaattttgattctgatgaacctgttggtttttggatgataacacctagtaatgaatttcgtaatggtggac |
28384759 |
T |
|
| Q |
109 |
ccattaagcaagatcttacttctcatgttggacccatcactctctcggtatgtcc |
163 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28384760 |
caattaagcaagatcttacttctcatgttggacccatcactctctcggtatgtcc |
28384814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 28391982 - 28392117
Alignment:
| Q |
25 |
ttcatggttggattaattttgattctgatgaacctgttggtttttggatgataacacctagtaatgaatttcgtaatggtggacccattaagcaagatct |
124 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||| || ||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
28391982 |
ttcatggatggattggttttgattctgatccaccagtgggtttctggatgataacaccgagtaatgagtttcgcaatggtggacccattaagcaagatct |
28392081 |
T |
|
| Q |
125 |
tacttctcatgttggacccatcactctctcggtatg |
160 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
28392082 |
tacttctcatgttggaccaatcgctctttcggtatg |
28392117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 28411062 - 28410908
Alignment:
| Q |
9 |
aacatagataacactattcatggttggattaattttgattctgatgaacctgttggtttttggatgataacacctagtaatgaatttcgtaatggtggac |
108 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||| | ||||||||||| | || ||||| |||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
28411062 |
aacataaataacacagttcatggatggattagtcttgattctgatccgaccgtgggtttctggatgataacaccaagtaatgagtttcgcaatggtggac |
28410963 |
T |
|
| Q |
109 |
ccattaagcaagatcttacttctcatgttggacccatcactctctcggtatgtcc |
163 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
28410962 |
ccattaaacaagaccttacttctcatgctggacctatcaccctctcagtatgtcc |
28410908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 13368245 - 13368339
Alignment:
| Q |
45 |
gattctgatgaacctgttggtttttggatgataacacctagtaatgaatttcgtaatggtggacccattaagcaagatcttacttctcatgttgg |
139 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||||| |||||||| || ||||||||||| ||| ||||||||||||| || ||||||||||| |
|
|
| T |
13368245 |
gattctgaaaaacccgtgggtttttggatcataacaccgagtaatgagttccgtaatggtgggcccgttaagcaagatctcacatctcatgttgg |
13368339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University