View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_117 (Length: 251)
Name: NF6453A_low_117
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_117 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 36683893 - 36684123
Alignment:
| Q |
21 |
atcatagagattagtggtggtggatgaacgagtaagttcgttatatgttttgcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttc |
120 |
Q |
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| T |
36683893 |
atcatagagattagtggtggtggatgaacgagtcagttcgttatatgtttttcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttc |
36683992 |
T |
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| Q |
121 |
ttcccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattct |
220 |
Q |
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| T |
36683993 |
ttcccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattct |
36684092 |
T |
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| Q |
221 |
catctagcaatatgcattgtgtatatatatt |
251 |
Q |
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| T |
36684093 |
catctagcaatatgcattgtgaatatatatt |
36684123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 36673505 - 36673695
Alignment:
| Q |
61 |
ttatatgttttgcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcattcactttaaacatcgtgctgagatgatctt |
160 |
Q |
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| T |
36673505 |
ttatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgtccaccttaaacatcatgccaagatgatctt |
36673604 |
T |
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| Q |
161 |
caatgttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattctcatctagcaatatgcattgtgtatatatatt |
251 |
Q |
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| T |
36673605 |
caatgttgggattcataaatttggcctctccaaaattggatattttgggttcaaaattctcatctagcaatatgcattctgaacatatatt |
36673695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 36676260 - 36676437
Alignment:
| Q |
61 |
ttatatgttttgcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcattcactttaaacatcgtgctgagatgatctt |
160 |
Q |
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| T |
36676260 |
ttatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgttcaccttaaacatcatgccaagatgatctt |
36676359 |
T |
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| Q |
161 |
caatgttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattctcatctagcaatatgcatt |
238 |
Q |
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| T |
36676360 |
caatgttgggattcataaatttggcctctccaaaattggatatttttggttcaaagttctcatctagcaatatgcatt |
36676437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 36695789 - 36695856
Alignment:
| Q |
61 |
ttatatgttttgcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttcttcccgtc |
128 |
Q |
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| T |
36695789 |
ttatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtc |
36695856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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