View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_126 (Length: 248)
Name: NF6453A_low_126
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_126 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 51254302 - 51254525
Alignment:
| Q |
10 |
actctcactacatttctggggttaccgttaagacaatccacgtacgaagccctatccaatgccattccgatgaatcccttccaatcctcaccggagccat |
109 |
Q |
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| T |
51254302 |
actctcactacatttctagggttaccgttaagacaatccacgtacgaagccctatccaatgccattccgatgaatcccttccaatcctcaccggagccat |
51254401 |
T |
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| Q |
110 |
gcaactgttgcggcttcacaccgacaacctctctcttcctccacactatcacctacagagccatcaaccgtcgtttctgcacaaactgcgttctcaaaca |
209 |
Q |
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| T |
51254402 |
gcgactgttgcggcttcacaccgacaacctctctcttcctccacactatcacctacagagccatcaaccgtcgtttctgcacaaactgcgttctcaaaca |
51254501 |
T |
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| Q |
210 |
acaacaaggcactttttgccctat |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
51254502 |
acaacaaggcactttttgccctat |
51254525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 11764 - 11863
Alignment:
| Q |
135 |
aacctctctcttcctccacactatcacctacagagccatcaaccgt-cgtttctgcacaaactgcgttctcaaacaacaacaaggcactttttgccctat |
233 |
Q |
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|||||||||| |||||||| | |||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
11764 |
aacctctctcatcctccacgccatcaccaacagagccatcaaatgttcgtttctgcacaaattgcgttctcaaacaacaacaaggcacttctttccctat |
11863 |
T |
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