View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_127 (Length: 247)
Name: NF6453A_low_127
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_127 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 4082874 - 4083112
Alignment:
| Q |
3 |
aagaacatagaacaaattgtcagcaatagaaatcacttacatagataatatcttttgtcatgggaagaagattgccctatgacaatgccaataattcatt |
102 |
Q |
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| T |
4082874 |
aagaacatagaacaaattgtcagcaatagaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttatt |
4082973 |
T |
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| Q |
103 |
gataggtccatttctatatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaa |
202 |
Q |
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| T |
4082974 |
aataggtccatttctaaatttttcattctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaa |
4083073 |
T |
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| Q |
203 |
ttgacgccgccccctacaacaccgatatcaaacaccaaa |
241 |
Q |
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| T |
4083074 |
ttgacgccgccccctacaacaccgatatcaaacaccaaa |
4083112 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
154 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
197 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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