View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_129 (Length: 247)
Name: NF6453A_low_129
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_129 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 34142215 - 34142453
Alignment:
| Q |
9 |
tggtgttctgaaaaccacaaatatcaatatgcaaaacatgttagcaacttagcatttgatcagatggaaaataacaagcattcaaaaatcattgaactag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142215 |
tggtgttctgaaaaccacaaatatcaatatgcaaaacatgttagcaacttagcatttgatcagatggaaaataacaagcattcaaaaatcattgaactag |
34142314 |
T |
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| Q |
109 |
ctctactcatttgcaaccataatcttgctaccaaaaacccagtttgtgaggcaaaatcaattaattgtataacctatatactaatgtataaacaagctca |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
34142315 |
ctctacgcatttgcaaccataatcttgctaccaaaaacccagtttgtgaggcaaaatcaattaattgtataaactatataataatgtataaacaagctca |
34142414 |
T |
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| Q |
209 |
aagagggacggttattttaatagtcattatgagtgagca |
247 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
34142415 |
aagagggacggttaatttaatagtcattatgagtgagca |
34142453 |
T |
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