View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_13 (Length: 443)

Name: NF6453A_low_13
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_13
NF6453A_low_13
[»] chr3 (14 HSPs)
chr3 (7-437)||(5484450-5484878)
chr3 (13-255)||(5525676-5525916)
chr3 (7-162)||(5828155-5828310)
chr3 (7-164)||(5502928-5503085)
chr3 (7-197)||(5490083-5490272)
chr3 (7-195)||(5454907-5455095)
chr3 (7-193)||(20343528-20343715)
chr3 (7-126)||(5848884-5849003)
chr3 (26-133)||(5854204-5854311)
chr3 (26-197)||(5446346-5446517)
chr3 (14-127)||(5802494-5802607)
chr3 (249-313)||(5525588-5525652)
chr3 (375-435)||(5525497-5525557)
chr3 (369-437)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (26-197)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Complemental strand, 5484878 - 5484450
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||||| ||||||||||||||||||    
T  5484878 tatcagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggca 5484779  T
Q  107 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatattttgcccaaatttatttatttcatcatttgtgtgatagaaat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||   |    
T  5484778 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatagc--t 5484681  T
Q  207 ggtactgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgtta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484680 ggtactgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgtta 5484581  T
Q  307 aaaacataaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaac 406  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  5484580 aaaacataaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacc 5484481  T
Q  407 tacagatcatataaagaatacgagaaacttg 437  Q
    |||||||||||||||||||||||||||||||    
T  5484480 tacagatcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 5525916 - 5525676
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||    ||||||||||||||||||||  |||||||||||    
T  5525916 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatcttca 5525817  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatattttgcccaaatttatttatttcatcatttgtgtgatagaaatggtact 212  Q
    |||||||||||||| | |||| |  |||||||||  || |||||| |||||| | || ||  ||||| |||||||||||||||||||||||| ||| |||    
T  5525816 gaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcaca--tttatatatttcatcatttgtgtgatagaactggcact 5525719  T
Q  213 gataccttaactgtttaattaataggaaaagattacaaaacat 255  Q
    | ||||||||| |||||||||||||||| ||||||||||||||    
T  5525718 gctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 5828155 - 5828310
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| |||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||    |||||||||||||||||||| || |||    
T  5828155 tatcagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgca 5828254  T
Q  107 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagat 162  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  5828255 tcttccgaacttggtattttcatttccaaagacatattttacctcttcagttagat 5828310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 5503085 - 5502928
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||    
T  5503085 tatcagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggca 5502986  T
Q  107 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatat 164  Q
    |||||||| |||||||||||||||| | |  ||||||||| ||  |||||| ||||||    
T  5502985 tcttcagagcttggtattttcatttgctattacatattttgtcctttcagttagatat 5502928  T

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Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 5490272 - 5490083
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || || ||||||||||||||||||||| |||||    
T  5490272 tatcaaagatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca 5490173  T
Q  107 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatattttgcccaaatttatttatttcatcatttgtgt 197  Q
    ||||||||||||||||||||||||||  |  ||||||||| ||| |||||| |||||| | ||  |||||||  ||||||| |||||||||    
T  5490172 tcttcagaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

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Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 5455095 - 5454907
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| ||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || || ||||||||||||||||||||| |||||    
T  5455095 tatcagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca 5454996  T
Q  107 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatattttgcccaaatttatttatttcatcatttgt 195  Q
    ||||||||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||| | ||  ||| |||| ||||||| |||||||    
T  5454995 tcttcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

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Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 20343715 - 20343528
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| |||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || || |||||||||||||| |||||||| |||    
T  20343715 tatcagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagca 20343616  T
Q  107 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatattttgcccaaattt-atttatttcatcattt 193  Q
    ||||||||||||||||||||||||||| |  |||| ||||  || | |||| |||||| |||| ||||||| || ||||||| |||||    
T  20343615 tcttcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

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Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 5848884 - 5849003
Alignment:
Q  7 tatcatagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggca 106  Q
    ||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||    |||||||||||||||||||| || |||    
T  5848884 tatcagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgca 5848983  T
Q  107 tcttcagaacttggtatttt 126  Q
    ||||||||||| ||||||||    
T  5848984 tcttcagaactcggtatttt 5849003  T

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Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 5854204 - 5854311
Alignment:
Q  26 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggcatcttcagaacttggtattt 125  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||| || || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5854204 ggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtattt 5854303  T
Q  126 tcatttcc 133  Q
     |||||||    
T  5854304 acatttcc 5854311  T

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Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  26 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggcatcttcagaacttggtattt 125  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  126 tcatttccaaagacatattttatctcttcagtcagatattttgcccaaatttatttatttcatcatttgtgt 197  Q
    ||||||   |  ||||||||| ||  |||||| |||||| | ||  |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  14 gatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggcatcttcag 113  Q
    |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||    |||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  114 aacttggtattttc 127  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  249 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 313  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  375 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 435  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  369 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 437  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  26 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcacggacaagacatttacatacggctggcatcttcagaacttggtattt 125  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  126 tcatttccaaagacatattttatctcttcagtcagatattttgcccaaatttatttatttcatcatttgtgt 197  Q
    ||||||   |  ||||||||| ||  |||||| |||||| | ||  |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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