View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_132 (Length: 245)

Name: NF6453A_low_132
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_132
NF6453A_low_132
[»] chr7 (14 HSPs)
chr7 (1-226)||(42680590-42680816)
chr7 (42-219)||(8733342-8733521)
chr7 (45-219)||(19786940-19787116)
chr7 (45-209)||(16534985-16535151)
chr7 (45-209)||(16630511-16630677)
chr7 (1-209)||(3052371-3052570)
chr7 (74-219)||(3932873-3933021)
chr7 (1-108)||(3053457-3053565)
chr7 (58-201)||(21768933-21769077)
chr7 (74-167)||(3933033-3933130)
chr7 (74-142)||(16534903-16534974)
chr7 (74-142)||(16630688-16630759)
chr7 (74-142)||(19787127-19787198)
chr7 (74-142)||(8733263-8733334)
[»] chr1 (3 HSPs)
chr1 (1-219)||(10909266-10909485)
chr1 (1-219)||(2409762-2409983)
chr1 (60-219)||(734445-734605)
[»] scaffold1361 (1 HSPs)
scaffold1361 (1-219)||(114-334)
[»] chr2 (3 HSPs)
chr2 (1-219)||(42277588-42277808)
chr2 (70-219)||(31487043-31487194)
chr2 (2-52)||(31487186-31487235)
[»] chr5 (4 HSPs)
chr5 (2-209)||(37208054-37208262)
chr5 (45-219)||(11852025-11852201)
chr5 (74-222)||(15469229-15469379)
chr5 (113-142)||(11851985-11852014)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-219)||(29488-29708)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-219)||(88505-88725)
[»] chr4 (7 HSPs)
chr4 (1-219)||(45162338-45162558)
chr4 (1-159)||(42470466-42470627)
chr4 (72-219)||(13774310-13774460)
chr4 (60-219)||(42470634-42470794)
chr4 (102-216)||(24907984-24908099)
chr4 (45-95)||(13774467-13774517)
chr4 (74-142)||(13774528-13774599)
[»] chr6 (1 HSPs)
chr6 (1-208)||(20642346-20642555)
[»] chr8 (5 HSPs)
chr8 (70-219)||(36379340-36379491)
chr8 (1-159)||(4877317-4877478)
chr8 (60-219)||(4877150-4877310)
chr8 (29-142)||(7938990-7939104)
chr8 (2-52)||(36379299-36379348)
[»] chr3 (7 HSPs)
chr3 (1-167)||(18965957-18966125)
chr3 (72-219)||(4530994-4531144)
chr3 (73-209)||(1701344-1701483)
chr3 (140-189)||(18966157-18966206)
chr3 (45-95)||(4531151-4531201)
chr3 (74-142)||(4531212-4531283)
chr3 (30-141)||(26306778-26306890)
[»] scaffold0045 (2 HSPs)
scaffold0045 (58-200)||(64134-64273)
scaffold0045 (58-200)||(71466-71605)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 42680590 - 42680816
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaa 99  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||| ||||    
T  42680590 tggtggtgaagacttgttaatcaagggttttcttcacttcccaaacaaaatgacggggtttgttttgcgaacaaaatggttacaaagtgaagttttacaa 42680689  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  42680690 aggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactttgaggtatcgtaaccagctctgatgccaaatctggctca 42680789  T
Q  200 ggaacaaaagaaaatgtagaaaatatt 226  Q
    || ||||||||||||||||| ||||||    
T  42680790 gggacaaaagaaaatgtagagaatatt 42680816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 8733342 - 8733521
Alignment:
Q  42 caaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat 140  Q
    ||||||||||||||| |||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8733342 caaacaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgat 8733441  T
Q  141 tttt-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || |||||    
T  8733442 tttttcgctcaaactcaactccgaggtattgtaaccagctctgatgccaaatctggctcagggacaaaagagaaggtaga 8733521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 19787116 - 19786940
Alignment:
Q  45 acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt 143  Q
    |||||||||||| |||||||| |||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  19787116 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttactcacttgaaaactcactttccgttgatttt 19787017  T
Q  144 t-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| |||||    
T  19787016 ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctagctcagggacaaaaggaaaggtaga 19786940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 16534985 - 16535151
Alignment:
Q  45 acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt 143  Q
    |||||||||||| |||||||| |||| |||||||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||| ||||||||||    
T  16534985 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt 16535084  T
Q  144 tc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag 209  Q
     | || ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||    
T  16535085 cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaag 16535151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 16630677 - 16630511
Alignment:
Q  45 acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt 143  Q
    |||||||||||| |||||||| |||| |||||||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||| ||||||||||    
T  16630677 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt 16630578  T
Q  144 tc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag 209  Q
     | || ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||    
T  16630577 cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaag 16630511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3052570 - 3052371
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||| |    
T  3052570 tggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttagcgaacaaaatggccgcaaagtgaagttttacga 3052471  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttgattttt--cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggct 197  Q
    ||||| |||||||            | ||||||||||||||||||  ||| ||||||||||||| | ||  ||||||||||||||||| ||||| |||||    
T  3052470 aggcagctccttg------------cacactttccgttgattttttccgctcaaactcaactccaaagttacgtaaccagctctgatgtcaaatctggct 3052383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 3933021 - 3932873
Alignment:
Q  74 aaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggtatcgt 171  Q
    |||| ||| |||||||||| ||||  || ||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||    
T  3933021 aaatagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgt 3932922  T
Q  172 aacc-agctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||| |||||||||||||||| ||||||||| ||||||| ||| |||||    
T  3932921 aaccaagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 3932873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3053457 - 3053565
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||  |||||||| ||||||||||||||| |||||||||| ||||| |    
T  3053457 tggtggtgaaaacttgttaaccaagggttttcctcacttcccaaacaaaatgacgatgttagtttagcgaacaaaatggccgcaaagtgaagttttacga 3053556  T
Q  100 aggcaactc 108  Q
    |||||||||    
T  3053557 aggcaactc 3053565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 21768933 - 21769077
Alignment:
Q  58 gttagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactc 155  Q
    |||||||| ||||||||| |||| ||||||||||||||  | || |||||||||||||| ||||||||||||||||||||| |||| ||| | |||||||    
T  21768933 gttagtttcgcgaacaaa-tggctacaaagtgaagttttgagaaagcaactccttgctcgcttgaaaactcactttccgtttatttcttctctcaaactc 21769031  T
Q  156 aactccgaggtatcgtaaccagctctgatgccaaatatggctcagg 201  Q
    |||||| ||||||||||||  ||||||| | ||||| | |||||||    
T  21769032 aactccaaggtatcgtaacttgctctgacgtcaaattttgctcagg 21769077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 3933130 - 3933033
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta 167  Q
    |||||||| |||||||||||||  | || ||||||||||||||  ||||||||||||||| ||||||||||| ||||| ||||| |||||| ||||||    
T  3933130 aaatggccgcaaagtgaagttttgagaaagcaactccttgctctcacttgaaaactcactctccgttgatttcttcgctcaaacacaactctgaggta 3933033  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 16534903 - 16534974
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 142  Q
    |||||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  16534903 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 16534974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 16630759 - 16630688
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 142  Q
    |||||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  16630759 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 16630688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 19787198 - 19787127
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 142  Q
    |||||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  19787198 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 19787127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 8733263 - 8733334
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 142  Q
    |||||||| |||||||||||||  | || |||||||||| |||  ||||||||||||||||||| |||||||    
T  8733263 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccattgattt 8733334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 10909485 - 10909266
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaa 99  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  10909485 tggtggtgaagacttattaaccaagggttttcttcacttcccaaacaaaatgacagggttagttttgcgaacgaaatggccgcaaagtgaagttttacaa 10909386  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10909385 aggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctca 10909286  T
Q  200 ggaacaaaagaaaatgtaga 219  Q
    || ||||||| ||| |||||    
T  10909285 gggacaaaaggaaaggtaga 10909266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2409762 - 2409983
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||||    
T  2409762 tggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttagttttgcgaacaaaatggccgcaaagtgaagttttacaa 2409861  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatgccaaatatggct 197  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| | ||||||||||||||| |||||    
T  2409862 aggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataactaggctctgatgccaaatctggct 2409961  T
Q  198 caggaacaaaagaaaatgtaga 219  Q
    |||| ||||||| ||| |||||    
T  2409962 cagggacaaaaggaaaggtaga 2409983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 734445 - 734605
Alignment:
Q  60 tagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaa 157  Q
    |||||| ||||||||| | ||| |||||||||| ||||  || ||||||||||||||||||||||||||||||| |||||||||| | || |||||||||    
T  734445 tagtttcgcgaacaaa-tagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaa 734543  T
Q  158 ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  734544 ctccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 734605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 334 - 114
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  334 tggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggggttagttttacgaacaaaatggccgcaaagtgaagttttacaa 235  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctc 198  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  234 aggcaactccttgctcacttgaaaactcacttttcgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgataccaaatctggctc 135  T
Q  199 aggaacaaaagaaaatgtaga 219  Q
    ||| ||||||| ||| |||||    
T  134 agggacaaaaggaaaggtaga 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 42277588 - 42277808
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||| |    
T  42277588 tggtggtgaagacttgttaaccaacggttttcttcacttcccaaacaaaatgacagggttagttttgcaaacaaaatggccgcaaagtgaagttttacta 42277687  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctc 198  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  42277688 aggcaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgatatcaaatctggctc 42277787  T
Q  199 aggaacaaaagaaaatgtaga 219  Q
    ||| ||||||| ||| |||||    
T  42277788 agggacaaaaggaaaggtaga 42277808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 31487194 - 31487043
Alignment:
Q  70 aacaaaatggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggta 167  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31487194 aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 31487095  T
Q  168 tcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  31487094 tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 31487043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 31487235 - 31487186
Alignment:
Q  2 ggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatg 52  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  31487235 ggtggtgaaga-ttgttaaccaagggttttcttcacttcctaaacaaaatg 31487186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 37208262 - 37208054
Alignment:
Q  2 ggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||  || |||||||| ||||||||||||||| ||||||||||||| |||||    
T  37208262 ggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggtggtgttagtttcgcgaacaaaatggccgcaaagtgaagttttacaaa 37208164  T
Q  101 ggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctca 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37208163 ggcaactccttgcgcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctca 37208064  T
Q  200 ggaacaaaag 209  Q
    || |||||||    
T  37208063 gggacaaaag 37208054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 11852025 - 11852201
Alignment:
Q  45 acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt 143  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  11852025 acaaaatgacggtgttagttttgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgtaaactcactttccgtttatttt 11852124  T
Q  144 t-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    | ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  11852125 ttcgctcaaactcaactccgaggtatcataaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 11852201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 15469379 - 15469229
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgt 171  Q
    ||||| ||||||||||||||||  | || |||||| ||| |||||||||||| | || ||  |||||||| ||| | |||||||||||| |||||||| |    
T  15469379 aaatgaccacaaagtgaagttttgagaaagcaacttcttactcacttgaaaattgaccttttgttgatttcttctctcaaactcaactctgaggtatcat 15469280  T
Q  172 aaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtagaaaa 222  Q
    |||| ||||||||||||| | ||||||||| ||||||| ||| ||| ||||    
T  15469279 aacctgctctgatgccaattctggctcagggacaaaaggaaaggtaaaaaa 15469229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 11851985 - 11852014
Alignment:
Q  113 ctcacttgaaaactcactttccgttgattt 142  Q
    ||||||||||||||||||||||||||||||    
T  11851985 ctcacttgaaaactcactttccgttgattt 11852014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 29708 - 29488
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||  ||||||||| |||||||    
T  29708 tggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttcacgaacaaaatggccgtaaagtgaagttttacaa 29609  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctc 198  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  29608 aggcaagtccttgctcacttgaaaacccactttccgttgatttttttgctcaaactcaacgccgaggtatcgtaaccagctctgatgccaaatctggctc 29509  T
Q  199 aggaacaaaagaaaatgtaga 219  Q
    ||| ||||||| ||| |||||    
T  29508 agggacaaaaggaaaggtaga 29488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 88725 - 88505
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||| |||||||||| |||||||    
T  88725 tggtggtgaaaa-ttgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagtgaagttttacaa 88627  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatgccaaatatggct 197  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||    
T  88626 aggaaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccaggctctaataccaaatctggct 88527  T
Q  198 caggaacaaaagaaaatgtaga 219  Q
    |||| ||||||| ||| |||||    
T  88526 cagggacaaaaggaaaggtaga 88505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45162558 - 45162338
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||| |||||||||| |||||||    
T  45162558 tggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagtgaagttttacaa 45162460  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatgccaaatatggct 197  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| | ||||||||||||||| |||||    
T  45162459 aggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataactaggctctgatgccaaatctggct 45162360  T
Q  198 caggaacaaaagaaaatgtaga 219  Q
    |||| ||||||| ||| |||||    
T  45162359 cagggacaaaaggaaaggtaga 45162338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 42470466 - 42470627
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaa 99  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||  |||||||||||||| ||||||||||||| ||||    
T  42470466 tggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttcacgaacaaaatggccgcaaagtgaagtttcacaa 42470565  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact 159  Q
    ||||||||||||||||  ||||||||||||||||||||||  |||||||| |||||||||||    
T  42470566 aggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact 42470627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 13774460 - 13774310
Alignment:
Q  72 caaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtat 168  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| ||||||||    
T  13774460 caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat 13774361  T
Q  169 cgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||||||||||||||| |||||| ||||||||| ||||||| ||| |||||    
T  13774360 cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtaga 13774310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 42470634 - 42470794
Alignment:
Q  60 tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa 157  Q
    |||||| ||||||||| ||||| |||||||||||||  | || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  42470634 tagtttcgcgaacaaa-tggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaa 42470732  T
Q  158 ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  42470733 ctccgtggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 42470794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 24907984 - 24908099
Alignment:
Q  102 gcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag 200  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||| ||||| |     
T  24907984 gcaactccttgctcacttaaaaactcactttctgttgatttcttcgctcaaactcaactctgaggtatcgtaacctgctctaataccaaatttggcttaa 24908083  T
Q  201 gaacaaaagaaaatgt 216  Q
    | ||||||| ||||||    
T  24908084 ggacaaaaggaaatgt 24908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 13774517 - 13774467
Alignment:
Q  45 acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt 95  Q
    |||||||||||| |||||||| |||| |||||||||| |||||||||||||    
T  13774517 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt 13774467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 13774599 - 13774528
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 142  Q
    |||||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  13774599 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 13774528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20642555 - 20642346
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||  |||||||||| ||| ||     
T  20642555 tggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacagtgttagtttcgcgaacaaaatggctgcaaagtgaagttttccac 20642456  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctc 198  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||| || || ||| | | ||||    
T  20642455 atgcaactccttgctcacttgaaaactcactttccgttgattttttcgctaaaactcgactccgaggtatcgtaaccagctttggtgtcaattcttgctc 20642356  T
Q  199 aggaacaaaa 208  Q
    ||| ||||||    
T  20642355 agggacaaaa 20642346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 36379340 - 36379491
Alignment:
Q  70 aacaaaatggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta 167  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36379340 aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta 36379439  T
Q  168 tcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  36379440 tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 36379491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4877478 - 4877317
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaa 99  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||  |||||||||||||| ||||||||||||| ||||    
T  4877478 tggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttcacgaacaaaatggccgcaaagtgaagtttcacaa 4877379  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact 159  Q
    ||||||||||||||||  ||||||||||||||||||||||  |||||||| |||||||||||    
T  4877378 aggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact 4877317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 4877310 - 4877150
Alignment:
Q  60 tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa 157  Q
    |||||| ||||||||| ||||| |||||||||||||  | || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  4877310 tagtttcgcgaacaaa-tggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaa 4877212  T
Q  158 ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  4877211 ctccgtggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga 4877150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 7938990 - 7939104
Alignment:
Q  29 tttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactc 127  Q
    |||||| ||||| |||||| ||| |||  ||| |||||  ||||||||||| | |||||||| |||| |||| | ||||||||| |||||| ||||||||    
T  7938990 tttcttaacttcccaaacataataacgatgtttgttttaagaacaaaatgggcgcaaagtgatgtttcacaaggacaactccttactcactggaaaactc 7939089  T
Q  128 actttccgttgattt 142  Q
    |||||||||| ||||    
T  7939090 actttccgtttattt 7939104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 36379299 - 36379348
Alignment:
Q  2 ggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatg 52  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  36379299 ggtggtgaaga-ttgttaaccaagggttttcttcacttcctaaacaaaatg 36379348  T

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Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 18965957 - 18966125
Alignment:
Q  1 tggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaa 99  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||  |||||||||||||| |||||||||| ||| ||     
T  18965957 tggtggtgaagacttgttaaccaagagttttcttcacttcccaatcaaaatgacggtgttagtttcccgaacaaaatggccgcaaagtgaagttttccat 18966056  T
Q  100 aggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggta 167  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||    
T  18966057 aggcaactccatgctcacttgaaaactcactttccgttgattttttcgctataactcaactccgaggta 18966125  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 4531144 - 4530994
Alignment:
Q  72 caaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtat 168  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| ||||||||    
T  4531144 caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat 4531045  T
Q  169 cgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga 219  Q
    |||||||||||||||| |||||| ||||||||| ||||||| ||| |||||    
T  4531044 cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtaga 4530994  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 1701483 - 1701344
Alignment:
Q  73 aaaatggccacaaagtgaagtttac-aaaggcaactccttgctcacttgaaaactcac-tttccgttgattt-ttcgcacaaactcaactccgaggtatc 169  Q
    ||||||||  |||||||||||||   ||| ||||||||||| ||||||||||||| || ||| ||||||||| ||||| |||||| ||||| ||||||||    
T  1701483 aaaatggctgcaaagtgaagttttggaaaagcaactccttgttcacttgaaaacttactttttcgttgatttcttcgctcaaactgaactctgaggtatc 1701384  T
Q  170 gtaaccagctctgatgccaaatatggctcaggaacaaaag 209  Q
     |||   ||||||||| ||||| ||| ||||| |||||||    
T  1701383 ttaatatgctctgatgtcaaatctggttcagggacaaaag 1701344  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 18966157 - 18966206
Alignment:
Q  140 tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaa 189  Q
    |||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  18966157 tttttcgctcaaactcaactccgaggtatcgtaaccagttctgctgccaa 18966206  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 4531201 - 4531151
Alignment:
Q  45 acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt 95  Q
    |||||||||||| |||||||| |||| |||||||||| |||||||||||||    
T  4531201 acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt 4531151  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 4531283 - 4531212
Alignment:
Q  74 aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt 142  Q
    |||||||| |||||||||||||  | || |||||||||| |||  |||||||||||||||||||||||||||    
T  4531283 aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt 4531212  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 26306890 - 26306778
Alignment:
Q  30 ttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactca 128  Q
    ||||||| ||| |||||||||||| || |||||| | ||||||||||| |||  |||||||||||| || || || | |  || |||||||||||||| |    
T  26306890 ttcttcatttcccaaacaaaatgaaggtgttagtgtcgcgaacaaaatagccgtaaagtgaagtttcacgaacgcgatttttttctcacttgaaaactta 26306791  T
Q  129 ctttccgttgatt 141  Q
    |||||| ||||||    
T  26306790 ctttccattgatt 26306778  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 64273 - 64134
Alignment:
Q  58 gttagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactc 155  Q
    |||||||| ||||||||| ||||| |||||||||||||    || |||| |||||||| ||||||||||     |||||||||||| ||||| |||||||    
T  64273 gttagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgctcaaactc 64179  T
Q  156 aactccgaggtatcgtaaccagctctgatgccaaatatggctcag 200  Q
    ||||| |||||| ||||||| ||| ||||| ||||| ||| ||||    
T  64178 aactctgaggtagcgtaacctgctttgatgtcaaatttggatcag 64134  T

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Target: scaffold0045; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 71605 - 71466
Alignment:
Q  58 gttagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactc 155  Q
    |||||||| ||||||||| ||||| |||||||||||||    || |||| |||||||| ||||||||||     |||||||||||| ||||| |||||||    
T  71605 gttagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgctcaaactc 71511  T
Q  156 aactccgaggtatcgtaaccagctctgatgccaaatatggctcag 200  Q
    ||||| |||||| ||||||| ||| ||||| ||||| ||| ||||    
T  71510 aactctgaggtagcgtaacctgctttgatgtcaaatttggatcag 71466  T

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