View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_140 (Length: 243)
Name: NF6453A_low_140
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_140 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 30810542 - 30810322
Alignment:
| Q |
23 |
catgtgttcatggatatagccacgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagt |
122 |
Q |
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| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
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| Q |
123 |
aaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaactatgtatt--tatataatatagtacatgaagaggggtagacatacacat |
218 |
Q |
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| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
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| Q |
219 |
ttaatgtgaggggagattgtg |
239 |
Q |
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| T |
30810342 |
ttaatgtgaggggagattgtg |
30810322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 30814989 - 30814920
Alignment:
| Q |
50 |
cattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataa |
120 |
Q |
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| T |
30814989 |
cattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattgaaaataaaataa |
30814920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 30820190 - 30820124
Alignment:
| Q |
55 |
ttgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
121 |
Q |
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| T |
30820190 |
ttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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