View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_141 (Length: 243)
Name: NF6453A_low_141
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_141 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22418282 - 22418056
Alignment:
| Q |
1 |
gggtttcaaagaaagagttaatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcatt |
100 |
Q |
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| T |
22418282 |
gggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcatt |
22418183 |
T |
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| Q |
101 |
ttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttattttgaagggtt |
200 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22418182 |
ttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgatttttattttgaagggtt |
22418083 |
T |
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| Q |
201 |
gatgaactatgaagatgatgatgatgt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22418082 |
gatgaactatgaagatgatgatgatgt |
22418056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12813442 - 12813220
Alignment:
| Q |
1 |
gggtttcaaagaaagagttaatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcatt |
100 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813442 |
gggtttcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcatt |
12813343 |
T |
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| Q |
101 |
ttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttattttgaagggtt |
200 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12813342 |
ttcttcaattcttctctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgacttttattttgaagggtt |
12813243 |
T |
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| Q |
201 |
gatgaactatgaagatgatgatg |
223 |
Q |
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| T |
12813242 |
gatgaactatgaagatgatgatg |
12813220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
172 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
222 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14998420 - 14998348
Alignment:
| Q |
1 |
gggtttcaaagaaagagttaatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaa |
73 |
Q |
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|||||| |||||||||| ||||||||||| |||||||||||||| || ||| || ||||| |||| ||||||| |
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| T |
14998420 |
gggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaagaa |
14998348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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