View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_143 (Length: 243)
Name: NF6453A_low_143
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_143 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 34570946 - 34571157
Alignment:
| Q |
19 |
aacatcctggtcaaatggaccgtcaagatcaaaaacttccacatacaaaactgatggtggttcttccatagcatcaaactctaatatctctgcatattag |
118 |
Q |
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| T |
34570946 |
aacatcctggtcaaatggaccgtcaaaatcaaaaacttccacatacaaaactgatggtggttcttccatagcatcaaactctaatatctctgcatattag |
34571045 |
T |
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| Q |
119 |
tacataaaaccaatacagaatataagtaaataaacattcaaattgaaacaannnnnnnagcaattaagtggcaagtcagaagggcaaaccattccattga |
218 |
Q |
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| T |
34571046 |
tatataaaaccaatacagaatataagtaaagaaacattcaaattgaaacaatttttttagcaattaagtggcaagtcagaaggacaaaccattccattga |
34571145 |
T |
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| Q |
219 |
ggatctgatgtc |
230 |
Q |
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| T |
34571146 |
ggatctgatgtc |
34571157 |
T |
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