View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_151 (Length: 239)
Name: NF6453A_low_151
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_151 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 33713843 - 33714042
Alignment:
| Q |
20 |
ctaatgttgaaatagaaaggtgccattttttgacaggttcatttatttcccaaatcctttgaaatctagttatcttatctgtacaaagaaataaattaca |
119 |
Q |
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| T |
33713843 |
ctaatgttgaaatggaaaggtaccattttttgacaggttcatttatttcccaaatcctttgaaatctagttatcttatctgtacaaagaaattaattaca |
33713942 |
T |
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| Q |
120 |
ttttgatcaaaaatttaagccataagttcaatcagataatattctcttgttctcaaatattggtaactatggctttgtacagagtatgttatatttgatt |
219 |
Q |
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| T |
33713943 |
ttttgatcaaaaatttaagccataagttcaatcagataatactctcttgttctcaaatattggtaactatggc-ttgtacagagtatgttatatttgatt |
33714041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 21355755 - 21355836
Alignment:
| Q |
45 |
ttttttgacaggttcatttatttcccaaatcctttgaaatctagttatcttatctgtacaaagaaataaattacattttgatcaaa |
130 |
Q |
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| T |
21355755 |
ttttttgacaggttcattt----cccaaatcctttgaaattttgttatcttataagtacaaagaaatgaatttcattttgatcaaa |
21355836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 21257215 - 21257290
Alignment:
| Q |
81 |
aaatctagttatcttatctgtacaaagaaataaattacattttgatcaaaaatttaagccataagttcaatcagat |
156 |
Q |
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||||||| ||||||||||| |||||||||| ||||||||||||| | || || |||||||||||||||||||||| |
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| T |
21257215 |
aaatctacttatcttatctacacaaagaaatcaattacattttgaacgaacatgtaagccataagttcaatcagat |
21257290 |
T |
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