View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453A_low_156 (Length: 235)
Name: NF6453A_low_156
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_156 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 2097888 - 2098096
Alignment:
| Q |
15 |
cgccgctcctcctatttattcaggtgtttgcatttcctcaatgatgataggatggtaaaactgttgtatcttttcaatcatgatttcgtacttttatact |
114 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2097888 |
cgcctctcctcctattttttcaggtgtttgcatttcctcaatgatgataggatggtaaaactgttgtatcttttcattcatgatttcgtacttttatact |
2097987 |
T |
|
| Q |
115 |
agtacttctgtgtcgtcctccaattaaaaaacaaatactccattattagggtatctccaacccgtggtattacattaccaggaaagtcaccaacacggga |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2097988 |
agtacttctgtgtcgtcctccaattataaaacaaatactccattattagggtatctccaacccgtggtattacattacgaggaaagtcaccaacacggga |
2098087 |
T |
|
| Q |
215 |
acaccaaac |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
2098088 |
acaccaaac |
2098096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University