View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_161 (Length: 233)
Name: NF6453A_low_161
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_161 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 43229625 - 43229835
Alignment:
| Q |
10 |
gagatggacatcaaaactatgtacaaaatatgttgcaaatcttttctatcaaacataaaccagtaaccatggtttaaatcagattatccatagaaaggat |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43229625 |
gagaaggacgtcaaaactatgtacaaaatatgttgcaaatcttttctatcaaacataaaccagtaaccatggtttaaatcagattatccatagaaaggat |
43229724 |
T |
|
| Q |
110 |
gagggg-aaaagaaaaagttaaggcatgaactcggatcaaaatcagaggtatggtaagcattatcaatatgtttggctgtaccaaaaatgactctgtatt |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
43229725 |
gagggggaaaagaaaaagttaaggcatgaactcggatcaaaatcagaggtatggtaagcattatcaatctgtttggctgtaccaaaaatgactgtgtatt |
43229824 |
T |
|
| Q |
209 |
tagtataatat |
219 |
Q |
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||||||||||| |
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| T |
43229825 |
tagtataatat |
43229835 |
T |
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