View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_172 (Length: 230)
Name: NF6453A_low_172
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_172 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 36684236 - 36684460
Alignment:
| Q |
1 |
aaagggtacaaccatttggaaagccttccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaagcatgggaactatat |
100 |
Q |
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| T |
36684236 |
aaagggtacaaccatttggaaagccttccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaagcatgggaactatat |
36684335 |
T |
|
| Q |
101 |
ttttatgcctgtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36684336 |
ttttatgtctgtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatt |
36684435 |
T |
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| Q |
201 |
tggtagatttccctggtacatcatt |
225 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
36684436 |
tggtagatttccctgatacatcatt |
36684460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 36676571 - 36676787
Alignment:
| Q |
9 |
caaccatttggaaagccttccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaagcatgggaactatatttttatgc |
108 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||||| || |
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| T |
36676571 |
caaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaagcatgggaactatatttttgtgt |
36676670 |
T |
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| Q |
109 |
ctgtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagat |
208 |
Q |
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| T |
36676671 |
ctgtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaacagctagtaattgaccattaggcagaa |
36676770 |
T |
|
| Q |
209 |
ttccctggtacatcatt |
225 |
Q |
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||| |||||||||||| |
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| T |
36676771 |
atccttggtacatcatt |
36676787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 36673816 - 36674032
Alignment:
| Q |
9 |
caaccatttggaaagccttccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaagcatgggaactatatttttatgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||| ||||||||| ||||||| ||||||||||||||| || |
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| T |
36673816 |
caaccatttggaaagccttccatttgacatgtatgcatatgctaaaacctgttcctttcctttaatgcagaacccaagcaggggaactatatttttttgt |
36673915 |
T |
|
| Q |
109 |
ctgtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagat |
208 |
Q |
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| T |
36673916 |
ctgtacttacacaaaatcgttgtttccaaaaggaactgccttttaaatagccgagagtcaaatattctcttaatagccagtaactgaccattaggaagaa |
36674015 |
T |
|
| Q |
209 |
ttccctggtacatcatt |
225 |
Q |
| |
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||| |||||||||||| |
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| T |
36674016 |
atccttggtacatcatt |
36674032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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