View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_173 (Length: 230)
Name: NF6453A_low_173
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_173 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 8946988 - 8947195
Alignment:
| Q |
12 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggactttagtcattccattatcattaaaactttcact |
111 |
Q |
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| T |
8946988 |
tgttgcaaaatgatgaattgttgctattttcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
8947087 |
T |
|
| Q |
112 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggcattgt |
211 |
Q |
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| T |
8947088 |
ctcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
8947187 |
T |
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| Q |
212 |
ggtgagtg |
219 |
Q |
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|||||||| |
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| T |
8947188 |
ggtgagtg |
8947195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 8973507 - 8973299
Alignment:
| Q |
12 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggactttagtcattccattatcattaaaactttcact |
111 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||| | || || ||| ||||||| || ||||||||||| |
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| T |
8973507 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcact |
8973408 |
T |
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| Q |
112 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggcattgt |
211 |
Q |
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| T |
8973407 |
ttctggccaaacaccggtatcaatcataccaacaatgacatctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgt |
8973308 |
T |
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| Q |
212 |
ggtgagtga |
220 |
Q |
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| T |
8973307 |
ggtgagtga |
8973299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 8962105 - 8961962
Alignment:
| Q |
12 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggactttagtcattccattatcattaaaactttcact |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||| | |||||||||||| ||||||||||| |
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| T |
8962105 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataatttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcact |
8962006 |
T |
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| Q |
112 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatctt |
155 |
Q |
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| T |
8962005 |
ttctggccaaacaccggtatcaatcacaccaacaatgacatctt |
8961962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 21688169 - 21688346
Alignment:
| Q |
42 |
caaattgacataacttccctttccattttgaagggactttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaacc |
141 |
Q |
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| T |
21688169 |
caaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacacc |
21688268 |
T |
|
| Q |
142 |
aataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggcattgtggtgagtg |
219 |
Q |
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|| ||||| ||||| |||||| | ||||| ||||||||||||| | ||||||| |||||||| |||| |||||||| |
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| T |
21688269 |
aacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
59 |
cctttccattttgaagggactttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
137 |
Q |
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||||||||||||||||| | |||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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