View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_179 (Length: 229)
Name: NF6453A_low_179
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_179 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 6916525 - 6916307
Alignment:
| Q |
7 |
aattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcct |
106 |
Q |
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| T |
6916525 |
aattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcct |
6916426 |
T |
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| Q |
107 |
gatcattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttc |
206 |
Q |
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| T |
6916425 |
gaacattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttc----agcataacaggttc |
6916330 |
T |
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| Q |
207 |
taatataactggtctggaagctg |
229 |
Q |
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| T |
6916329 |
taatataactggtctggaagctg |
6916307 |
T |
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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 15037825 - 15037917
Alignment:
| Q |
135 |
cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagc |
227 |
Q |
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| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagc |
15037917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
20 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
74 |
Q |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
73 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
135 |
Q |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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