View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_189 (Length: 226)
Name: NF6453A_low_189
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_189 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12813601 - 12813817
Alignment:
| Q |
1 |
acttcctcaacctttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgactgccgccacatatatannnn |
100 |
Q |
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| T |
12813601 |
acttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgac---cgccacatatatatttt |
12813697 |
T |
|
| Q |
101 |
nnnacattccattttaaccctatcttctaaacataaaatannnnnnnggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813698 |
tttacattccattttaaccctatcttctaaacataaaatatttttttggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaatttt |
12813797 |
T |
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| Q |
201 |
gacaaaggtcatatatagtg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
12813798 |
gacaaaggtcatatatagtg |
12813817 |
T |
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Back To:
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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 22418304 - 22418378
Alignment:
| Q |
3 |
ttcctcaacctttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
77 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22418304 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacgcaatt |
22418378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30622035 - 30622111
Alignment:
| Q |
1 |
acttcctcaacctttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
77 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
30622035 |
acttcctcaactcctcttgtgggccatcaccagtaagccacccacgaaaaacaccacgatccaacaaatacgcaatt |
30622111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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