View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_19 (Length: 413)
Name: NF6453A_low_19
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 55 - 391
Target Start/End: Original strand, 35880327 - 35880664
Alignment:
| Q |
55 |
attaacaaaatcaactataatcgatctaggacgtcaatttcggatcaaacatgttaaccgtgtgatgtaggctactt-gtaatccaaatccattgttcat |
153 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
35880327 |
attaacaaaatgaactataatcgatctaggacgtcaatttcggatcaaacatgttaaccgtgtgatgtaggctactttgtaatccaaatccgttgttcat |
35880426 |
T |
|
| Q |
154 |
atttgatgtatatatggtaaagtttcatgattgaaggtaagtaatcgagggggattagaaaggcttttcgtgcccgtgacttagagataagtggaagacc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35880427 |
atttgatgtatatatggtaaagtttcatgattgaaggtaagtaatcgagggggattagaaaggcttttcgtgcccgtgacttagagataagtggaagacc |
35880526 |
T |
|
| Q |
254 |
ggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaaacatcgtcaatcttttct |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35880527 |
ggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaaacatcgtcaatcttttct |
35880626 |
T |
|
| Q |
354 |
catggctatgttatctcattccgagtgagcttgtatat |
391 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
35880627 |
catggctatgttatctcattccaagtgagcttgtatat |
35880664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 55 - 391
Target Start/End: Original strand, 24454528 - 24454865
Alignment:
| Q |
55 |
attaacaaaatcaactataatcgatctaggacgtcaatttcggatcaaacatgttaaccgtgtgatgtaggctactt-gtaatccaaatccattgttcat |
153 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
24454528 |
attaacaaaatgaactataatcgatctaggacgtcaatttcggatcaaacatgttaaccgtgtgatgtaggctactttgtaatccaaatccgttgttcat |
24454627 |
T |
|
| Q |
154 |
atttgatgtatatatggtaaagtttcatgattgaaggtaagtaatcgagggggattagaaaggcttttcgtgcccgtgacttagagataagtggaagacc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24454628 |
atttgatgtatatatggtaaagtttcatgattgaaggtaagtaatcgagggggattagaaaggcttttcgtgcccgtgacttagagataagtggaagacc |
24454727 |
T |
|
| Q |
254 |
ggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaaacatcgtcaatcttttct |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24454728 |
ggggcattatcaagtcaaggtcgcatgcgatgcgtttttctccaaactgaagctcatattaaggggcagcttaattaggaaaacatcgtcaatcttttct |
24454827 |
T |
|
| Q |
354 |
catggctatgttatctcattccgagtgagcttgtatat |
391 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
24454828 |
catggctatgttatctcattccaagtgagcttgtatat |
24454865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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