View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_193 (Length: 225)
Name: NF6453A_low_193
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_193 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36163117 - 36162892
Alignment:
| Q |
1 |
gttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagacagatag |
100 |
Q |
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| T |
36163117 |
gttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagtcagatag |
36163018 |
T |
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| Q |
101 |
tttagtaaaaatacaaggccagtcttaatcaacttaaatgcagtaagacggat-nnnnnnnggacagcaagaggtttcaccttaaggagatacagctggg |
199 |
Q |
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| T |
36163017 |
tttagtaaaaatacaaggccagtcttaatcaactttaatgcagtaagacggataaaaaaaaggacagcaagaggcttcaccttaaggagatacagctggg |
36162918 |
T |
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| Q |
200 |
tcaaattcaagttgacacatgataga |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36162917 |
tcaaattcaagttgacacatgataga |
36162892 |
T |
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