View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_194 (Length: 225)
Name: NF6453A_low_194
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_194 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 3115202 - 3114983
Alignment:
| Q |
7 |
gtcccctctttagtatttgtaaggactataatagcattttggtaatgccggggatacatttgaaactaagtgaataatatacgagttttcnnnnnnnnnn |
106 |
Q |
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| T |
3115202 |
gtcccctctttagtatttgtaaggactataatagaattttggtaatgccggggatacatttgaaactaagtgaataatatacgagttttcaaaaaaaaaa |
3115103 |
T |
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| Q |
107 |
nnnnnnn-ctaagtgaataatgtactaattttcaagattagtattttgcaattctagtgacaattctaaaatatttaacgactaggttgatacggtccta |
205 |
Q |
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| T |
3115102 |
aaaaaaaactaagtgaataatgtactaattttcaagattagtattttgcaattctagtgacaattctaaaatatttaacgactaggttgatacggtccta |
3115003 |
T |
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| Q |
206 |
caatttcagggaccaaattg |
225 |
Q |
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| T |
3115002 |
caatttcagggaccaaattg |
3114983 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 36498274 - 36498314
Alignment:
| Q |
185 |
gactaggttgatacggtcctacaatttcagggaccaaattg |
225 |
Q |
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| T |
36498274 |
gactaggttgatacggtccaacaatgtcagggaccaaattg |
36498314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 21496644 - 21496684
Alignment:
| Q |
185 |
gactaggttgatacggtcctacaatttcagggaccaaattg |
225 |
Q |
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| T |
21496644 |
gactaggttgatacaatcctacaatttcagggaccaaattg |
21496684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 7424242 - 7424202
Alignment:
| Q |
185 |
gactaggttgatacggtcctacaatttcagggaccaaattg |
225 |
Q |
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| T |
7424242 |
gactaggttgatacagtcctacaattttagggatcaaattg |
7424202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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